Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
Msh4Q99MT2 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Agps-201ENSMUST00000047232 7359 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Gm8258-201ENSMUST00000055593 1449 ntBASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Gm9013-201ENSMUST00000132939 882 ntBASIC15.88■□□□□ 0.13
Msh4Q99MT2 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Msh4Q99MT2 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Gm5587-201ENSMUST00000206270 674 ntBASIC15.87■□□□□ 0.13
Msh4Q99MT2 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Msh4Q99MT2 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15.86■□□□□ 0.13
Msh4Q99MT2 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Gm33142-201ENSMUST00000193913 867 ntBASIC15.86■□□□□ 0.13
Msh4Q99MT2 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.86■□□□□ 0.13
Msh4Q99MT2 Tdrd12-201ENSMUST00000032701 1620 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Msh4Q99MT2 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC15.85■□□□□ 0.13
Msh4Q99MT2 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms