Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trim56Q80VI1 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Rprl3-201ENSMUST00000157400 290 ntBASIC19.19■□□□□ 0.66
Trim56Q80VI1 Gm27867-201ENSMUST00000184778 125 ntBASIC19.19■□□□□ 0.66
Trim56Q80VI1 Gm34391-201ENSMUST00000203706 907 ntBASIC19.19■□□□□ 0.66
Trim56Q80VI1 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC19.19■□□□□ 0.66
Trim56Q80VI1 AC114585.2-202ENSMUST00000228094 426 ntBASIC19.19■□□□□ 0.66
Trim56Q80VI1 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.19■□□□□ 0.66
Trim56Q80VI1 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trim56Q80VI1 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Gm7507-201ENSMUST00000183053 1008 ntBASIC19.18■□□□□ 0.66
Trim56Q80VI1 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 AC115863.1-201ENSMUST00000214815 1813 ntBASIC19.18■□□□□ 0.66
Trim56Q80VI1 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trim56Q80VI1 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.17■□□□□ 0.66
Trim56Q80VI1 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Gm15372-201ENSMUST00000120729 834 ntBASIC19.17■□□□□ 0.66
Trim56Q80VI1 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Gm44454-201ENSMUST00000198541 138 ntBASIC19.17■□□□□ 0.66
Trim56Q80VI1 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Ankrd10-201ENSMUST00000033905 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Trim56Q80VI1 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC19.16■□□□□ 0.66
Trim56Q80VI1 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Agtr1a-201ENSMUST00000066412 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trim56Q80VI1 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms