Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
Vps35Q9EQH3 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
Vps35Q9EQH3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps35Q9EQH3 AC131739.1-201ENSMUST00000221692 1245 ntBASIC23.2■■□□□ 1.3
Vps35Q9EQH3 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
Vps35Q9EQH3 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
Vps35Q9EQH3 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC23.19■■□□□ 1.3
Vps35Q9EQH3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
Vps35Q9EQH3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
Vps35Q9EQH3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
Vps35Q9EQH3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC23.18■■□□□ 1.3
Vps35Q9EQH3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Vps35Q9EQH3 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Vps35Q9EQH3 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
Vps35Q9EQH3 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
Vps35Q9EQH3 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Vps35Q9EQH3 Gm11599-201ENSMUST00000118720 878 ntBASIC23.15■■□□□ 1.3
Vps35Q9EQH3 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC23.15■■□□□ 1.3
Vps35Q9EQH3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Vps35Q9EQH3 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC23.14■■□□□ 1.29
Vps35Q9EQH3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
Vps35Q9EQH3 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Vps35Q9EQH3 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Vps35Q9EQH3 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Vps35Q9EQH3 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC23.13■■□□□ 1.29
Vps35Q9EQH3 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Vps35Q9EQH3 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Vps35Q9EQH3 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC23.12■■□□□ 1.29
Vps35Q9EQH3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Vps35Q9EQH3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Vps35Q9EQH3 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Vps35Q9EQH3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Vps35Q9EQH3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
Vps35Q9EQH3 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Vps35Q9EQH3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Vps35Q9EQH3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
Vps35Q9EQH3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.28
Vps35Q9EQH3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Vps35Q9EQH3 Gm37136-201ENSMUST00000194368 194 ntBASIC23.07■■□□□ 1.28
Vps35Q9EQH3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
Vps35Q9EQH3 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Vps35Q9EQH3 Gm37847-201ENSMUST00000192163 1497 ntBASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Gm31748-201ENSMUST00000194938 1497 ntBASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Vps35Q9EQH3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC23.04■■□□□ 1.28
Vps35Q9EQH3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Vps35Q9EQH3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Vps35Q9EQH3 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Vps35Q9EQH3 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Vps35Q9EQH3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Vps35Q9EQH3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Vps35Q9EQH3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Vps35Q9EQH3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps35Q9EQH3 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC23.02■■□□□ 1.28
Vps35Q9EQH3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps35Q9EQH3 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps35Q9EQH3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Vps35Q9EQH3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC23.01■■□□□ 1.27
Vps35Q9EQH3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Vps35Q9EQH3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC23■■□□□ 1.27
Vps35Q9EQH3 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Vps35Q9EQH3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC23■■□□□ 1.27
Vps35Q9EQH3 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Vps35Q9EQH3 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Vps35Q9EQH3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Vps35Q9EQH3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Vps35Q9EQH3 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Vps35Q9EQH3 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Vps35Q9EQH3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Vps35Q9EQH3 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Vps35Q9EQH3 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
Vps35Q9EQH3 Gm14121-201ENSMUST00000121441 1380 ntBASIC22.94■■□□□ 1.26
Vps35Q9EQH3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Vps35Q9EQH3 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
Vps35Q9EQH3 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
Vps35Q9EQH3 Gm5987-201ENSMUST00000196433 1151 ntBASIC22.91■■□□□ 1.26
Vps35Q9EQH3 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
Vps35Q9EQH3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
Vps35Q9EQH3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC22.89■■□□□ 1.26
Vps35Q9EQH3 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22.89■■□□□ 1.25
Vps35Q9EQH3 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
Vps35Q9EQH3 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
Vps35Q9EQH3 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
Vps35Q9EQH3 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC22.88■■□□□ 1.25
Vps35Q9EQH3 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
Vps35Q9EQH3 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
Vps35Q9EQH3 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
Vps35Q9EQH3 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
Vps35Q9EQH3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
Vps35Q9EQH3 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Vps35Q9EQH3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Vps35Q9EQH3 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
Vps35Q9EQH3 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
Vps35Q9EQH3 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
Vps35Q9EQH3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Vps35Q9EQH3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC22.84■■□□□ 1.25
Vps35Q9EQH3 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
Retrieved 100 of 76,532 protein–RNA pairs in 13.5 ms