Protein–RNA interactions for Protein: Q9CPR6

Krt88, Keratin 88, mousemouse

Predictions only

Length 171 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt88Q9CPR6 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Krt88Q9CPR6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Krt88Q9CPR6 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Krt88Q9CPR6 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Krt88Q9CPR6 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Krt88Q9CPR6 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Krt88Q9CPR6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Krt88Q9CPR6 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC20.89■□□□□ 0.93
Krt88Q9CPR6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Krt88Q9CPR6 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Krt88Q9CPR6 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Krt88Q9CPR6 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Krt88Q9CPR6 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Krt88Q9CPR6 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Krt88Q9CPR6 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Krt88Q9CPR6 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Krt88Q9CPR6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Krt88Q9CPR6 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Krt88Q9CPR6 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Krt88Q9CPR6 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Krt88Q9CPR6 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Krt88Q9CPR6 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Krt88Q9CPR6 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Krt88Q9CPR6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Krt88Q9CPR6 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Krt88Q9CPR6 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Krt88Q9CPR6 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Krt88Q9CPR6 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.82■□□□□ 0.92
Krt88Q9CPR6 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Krt88Q9CPR6 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Krt88Q9CPR6 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Krt88Q9CPR6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.79■□□□□ 0.92
Krt88Q9CPR6 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Krt88Q9CPR6 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Krt88Q9CPR6 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC20.78■□□□□ 0.92
Krt88Q9CPR6 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Krt88Q9CPR6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Krt88Q9CPR6 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Krt88Q9CPR6 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
Krt88Q9CPR6 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Krt88Q9CPR6 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Krt88Q9CPR6 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Krt88Q9CPR6 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.75■□□□□ 0.91
Krt88Q9CPR6 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
Krt88Q9CPR6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Krt88Q9CPR6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Krt88Q9CPR6 Gm37847-201ENSMUST00000192163 1497 ntBASIC20.75■□□□□ 0.91
Krt88Q9CPR6 Gm31748-201ENSMUST00000194938 1497 ntBASIC20.75■□□□□ 0.91
Krt88Q9CPR6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.74■□□□□ 0.91
Krt88Q9CPR6 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Krt88Q9CPR6 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Krt88Q9CPR6 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Krt88Q9CPR6 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Krt88Q9CPR6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
Krt88Q9CPR6 Particl-201ENSMUST00000205370 1560 ntBASIC20.71■□□□□ 0.91
Krt88Q9CPR6 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Krt88Q9CPR6 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Krt88Q9CPR6 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Krt88Q9CPR6 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Krt88Q9CPR6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Krt88Q9CPR6 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Krt88Q9CPR6 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Gm43863-201ENSMUST00000203822 1192 ntBASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Krt88Q9CPR6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Krt88Q9CPR6 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Krt88Q9CPR6 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Krt88Q9CPR6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Krt88Q9CPR6 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Krt88Q9CPR6 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.66■□□□□ 0.9
Krt88Q9CPR6 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC20.66■□□□□ 0.9
Krt88Q9CPR6 AC157572.2-201ENSMUST00000226970 908 ntBASIC20.66■□□□□ 0.9
Krt88Q9CPR6 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Krt88Q9CPR6 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Krt88Q9CPR6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Krt88Q9CPR6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Krt88Q9CPR6 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
Krt88Q9CPR6 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Krt88Q9CPR6 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Krt88Q9CPR6 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms