Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Ushbp1Q8R370 Mir6538-201ENSMUST00000183713 110 ntBASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Ushbp1Q8R370 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.11■■□□□ 1.77
Ushbp1Q8R370 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Ushbp1Q8R370 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
Ushbp1Q8R370 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Ushbp1Q8R370 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Ushbp1Q8R370 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Ushbp1Q8R370 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC26.07■■□□□ 1.76
Ushbp1Q8R370 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Ushbp1Q8R370 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC26.06■■□□□ 1.76
Ushbp1Q8R370 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Ushbp1Q8R370 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Ushbp1Q8R370 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC26.03■■□□□ 1.76
Ushbp1Q8R370 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.02■■□□□ 1.76
Ushbp1Q8R370 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Ushbp1Q8R370 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Ushbp1Q8R370 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26■■□□□ 1.75
Ushbp1Q8R370 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Ushbp1Q8R370 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Ushbp1Q8R370 Cap2-205ENSMUST00000225824 1634 ntBASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Particl-201ENSMUST00000205370 1560 ntBASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Ushbp1Q8R370 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.96■■□□□ 1.75
Ushbp1Q8R370 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
Ushbp1Q8R370 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Ushbp1Q8R370 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Ushbp1Q8R370 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Ushbp1Q8R370 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Ushbp1Q8R370 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Ushbp1Q8R370 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC25.91■■□□□ 1.74
Ushbp1Q8R370 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Ushbp1Q8R370 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
Ushbp1Q8R370 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Ushbp1Q8R370 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ushbp1Q8R370 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Ushbp1Q8R370 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Ushbp1Q8R370 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
Ushbp1Q8R370 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ushbp1Q8R370 AC131739.1-201ENSMUST00000221692 1245 ntBASIC25.86■■□□□ 1.73
Ushbp1Q8R370 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Ushbp1Q8R370 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Gm6311-201ENSMUST00000073790 878 ntBASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Ushbp1Q8R370 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
Ushbp1Q8R370 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ushbp1Q8R370 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Ushbp1Q8R370 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.72
Ushbp1Q8R370 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.82■■□□□ 1.72
Ushbp1Q8R370 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Ushbp1Q8R370 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Ushbp1Q8R370 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Ushbp1Q8R370 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Ushbp1Q8R370 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
Ushbp1Q8R370 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Ushbp1Q8R370 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms