Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Vma21Q78T54 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Vma21Q78T54 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Vma21Q78T54 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Vma21Q78T54 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vma21Q78T54 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Vma21Q78T54 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vma21Q78T54 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.83■□□□□ 0.6
Vma21Q78T54 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
Vma21Q78T54 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vma21Q78T54 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Vma21Q78T54 Gm30023-201ENSMUST00000197970 889 ntBASIC18.82■□□□□ 0.6
Vma21Q78T54 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Vma21Q78T54 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Vma21Q78T54 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vma21Q78T54 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Vma21Q78T54 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vma21Q78T54 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vma21Q78T54 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vma21Q78T54 Gm37847-201ENSMUST00000192163 1497 ntBASIC18.8■□□□□ 0.6
Vma21Q78T54 Gm31748-201ENSMUST00000194938 1497 ntBASIC18.8■□□□□ 0.6
Vma21Q78T54 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Vma21Q78T54 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vma21Q78T54 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vma21Q78T54 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vma21Q78T54 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vma21Q78T54 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Vma21Q78T54 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vma21Q78T54 Particl-201ENSMUST00000205370 1560 ntBASIC18.77■□□□□ 0.6
Vma21Q78T54 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Vma21Q78T54 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Vma21Q78T54 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Vma21Q78T54 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vma21Q78T54 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vma21Q78T54 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.76■□□□□ 0.59
Vma21Q78T54 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Vma21Q78T54 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vma21Q78T54 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vma21Q78T54 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vma21Q78T54 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vma21Q78T54 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vma21Q78T54 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vma21Q78T54 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Vma21Q78T54 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vma21Q78T54 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Vma21Q78T54 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vma21Q78T54 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Vma21Q78T54 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Vma21Q78T54 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vma21Q78T54 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vma21Q78T54 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Vma21Q78T54 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vma21Q78T54 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.7■□□□□ 0.58
Vma21Q78T54 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vma21Q78T54 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vma21Q78T54 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vma21Q78T54 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vma21Q78T54 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Vma21Q78T54 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vma21Q78T54 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vma21Q78T54 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.68■□□□□ 0.58
Vma21Q78T54 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vma21Q78T54 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vma21Q78T54 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vma21Q78T54 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vma21Q78T54 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vma21Q78T54 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Vma21Q78T54 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
Vma21Q78T54 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vma21Q78T54 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vma21Q78T54 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vma21Q78T54 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.66■□□□□ 0.58
Vma21Q78T54 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Vma21Q78T54 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Vma21Q78T54 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Vma21Q78T54 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Vma21Q78T54 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Vma21Q78T54 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Vma21Q78T54 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Vma21Q78T54 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Vma21Q78T54 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Vma21Q78T54 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Vma21Q78T54 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms