Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
Trim28Q62318 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
Trim28Q62318 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC31.01■■■□□ 2.55
Trim28Q62318 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
Trim28Q62318 Pkd1-207ENSMUST00000228550 1050 ntBASIC30.99■■■□□ 2.55
Trim28Q62318 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
Trim28Q62318 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
Trim28Q62318 Gm12818-201ENSMUST00000117562 1349 ntBASIC30.98■■■□□ 2.55
Trim28Q62318 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
Trim28Q62318 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
Trim28Q62318 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Trim28Q62318 Fezf2-202ENSMUST00000224023 1917 ntBASIC30.96■■■□□ 2.55
Trim28Q62318 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Trim28Q62318 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
Trim28Q62318 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
Trim28Q62318 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC30.93■■■□□ 2.54
Trim28Q62318 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Trim28Q62318 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC30.93■■■□□ 2.54
Trim28Q62318 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC30.93■■■□□ 2.54
Trim28Q62318 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC30.93■■■□□ 2.54
Trim28Q62318 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
Trim28Q62318 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC30.92■■■□□ 2.54
Trim28Q62318 Scarna2-201ENSMUST00000157560 414 ntBASIC30.91■■■□□ 2.54
Trim28Q62318 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC30.91■■■□□ 2.54
Trim28Q62318 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim28Q62318 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Trim28Q62318 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Trim28Q62318 Gm9812-201ENSMUST00000061934 968 ntBASIC30.89■■■□□ 2.54
Trim28Q62318 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
Trim28Q62318 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Trim28Q62318 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
Trim28Q62318 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
Trim28Q62318 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
Trim28Q62318 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
Trim28Q62318 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
Trim28Q62318 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC30.85■■■□□ 2.53
Trim28Q62318 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Gm9806-201ENSMUST00000051080 552 ntBASIC30.85■■■□□ 2.53
Trim28Q62318 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
Trim28Q62318 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Trim28Q62318 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim28Q62318 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Trim28Q62318 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
Trim28Q62318 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC30.84■■■□□ 2.53
Trim28Q62318 Cap2-205ENSMUST00000225824 1634 ntBASIC30.84■■■□□ 2.53
Trim28Q62318 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
Trim28Q62318 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Trim28Q62318 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC30.83■■■□□ 2.53
Trim28Q62318 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Trim28Q62318 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
Trim28Q62318 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Trim28Q62318 AC122317.2-201ENSMUST00000218708 1248 ntBASIC30.81■■■□□ 2.52
Trim28Q62318 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC30.8■■■□□ 2.52
Trim28Q62318 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
Trim28Q62318 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC30.8■■■□□ 2.52
Trim28Q62318 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Trim28Q62318 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC30.79■■■□□ 2.52
Trim28Q62318 Gm16437-201ENSMUST00000025669 507 ntBASIC30.79■■■□□ 2.52
Trim28Q62318 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Trim28Q62318 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Trim28Q62318 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Trim28Q62318 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
Trim28Q62318 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Trim28Q62318 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
Trim28Q62318 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Trim28Q62318 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
Trim28Q62318 Gm11687-201ENSMUST00000118911 886 ntBASIC30.74■■■□□ 2.51
Trim28Q62318 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Trim28Q62318 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Trim28Q62318 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Trim28Q62318 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Trim28Q62318 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC30.72■■■□□ 2.51
Trim28Q62318 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC30.72■■■□□ 2.51
Trim28Q62318 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Trim28Q62318 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC30.7■■■□□ 2.51
Trim28Q62318 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
Trim28Q62318 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
Trim28Q62318 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
Trim28Q62318 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
Trim28Q62318 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC30.69■■■□□ 2.5
Trim28Q62318 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
Trim28Q62318 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC30.69■■■□□ 2.5
Trim28Q62318 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
Trim28Q62318 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Trim28Q62318 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC30.67■■■□□ 2.5
Trim28Q62318 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
Trim28Q62318 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Trim28Q62318 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
Trim28Q62318 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Trim28Q62318 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC30.64■■■□□ 2.5
Trim28Q62318 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
Trim28Q62318 Gm9910-201ENSMUST00000195385 1550 ntBASIC30.63■■■□□ 2.49
Trim28Q62318 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC30.63■■■□□ 2.49
Trim28Q62318 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
Trim28Q62318 Gm4419-202ENSMUST00000226239 1431 ntBASIC30.63■■■□□ 2.49
Trim28Q62318 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
Retrieved 100 of 76,532 protein–RNA pairs in 10.8 ms