Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Nr1h4Q60641 Gm24970-201ENSMUST00000175582 82 ntBASIC22.04■■□□□ 1.12
Nr1h4Q60641 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC22.04■■□□□ 1.12
Nr1h4Q60641 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.04■■□□□ 1.12
Nr1h4Q60641 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Nr1h4Q60641 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Nr1h4Q60641 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Nr1h4Q60641 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Nr1h4Q60641 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Nr1h4Q60641 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Nr1h4Q60641 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Nr1h4Q60641 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Nr1h4Q60641 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Nr1h4Q60641 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC22.01■■□□□ 1.11
Nr1h4Q60641 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Nr1h4Q60641 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
Nr1h4Q60641 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Nr1h4Q60641 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Nr1h4Q60641 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC22■■□□□ 1.11
Nr1h4Q60641 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Nr1h4Q60641 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Nr1h4Q60641 Gm9397-201ENSMUST00000200125 605 ntBASIC22■■□□□ 1.11
Nr1h4Q60641 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Nr1h4Q60641 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Nr1h4Q60641 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
Nr1h4Q60641 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.98■■□□□ 1.11
Nr1h4Q60641 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Nr1h4Q60641 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
Nr1h4Q60641 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.98■■□□□ 1.11
Nr1h4Q60641 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.97■■□□□ 1.11
Nr1h4Q60641 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.97■■□□□ 1.11
Nr1h4Q60641 Particl-201ENSMUST00000205370 1560 ntBASIC21.97■■□□□ 1.11
Nr1h4Q60641 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Nr1h4Q60641 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
Nr1h4Q60641 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Nr1h4Q60641 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Nr1h4Q60641 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Nr1h4Q60641 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.95■■□□□ 1.1
Nr1h4Q60641 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
Nr1h4Q60641 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
Nr1h4Q60641 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC21.95■■□□□ 1.1
Nr1h4Q60641 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
Nr1h4Q60641 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Nr1h4Q60641 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Nr1h4Q60641 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.92■■□□□ 1.1
Nr1h4Q60641 Gm30023-201ENSMUST00000197970 889 ntBASIC21.92■■□□□ 1.1
Nr1h4Q60641 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Nr1h4Q60641 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Nr1h4Q60641 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Nr1h4Q60641 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
Nr1h4Q60641 Tdp2-203ENSMUST00000223804 1136 ntBASIC21.91■■□□□ 1.1
Nr1h4Q60641 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.91■■□□□ 1.1
Nr1h4Q60641 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Nr1h4Q60641 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
Nr1h4Q60641 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Nr1h4Q60641 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
Nr1h4Q60641 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Nr1h4Q60641 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
Nr1h4Q60641 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Nr1h4Q60641 Il17rd-202ENSMUST00000223942 2186 ntBASIC21.88■■□□□ 1.09
Nr1h4Q60641 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Nr1h4Q60641 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Nr1h4Q60641 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Nr1h4Q60641 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Nr1h4Q60641 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Nr1h4Q60641 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
Nr1h4Q60641 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
Nr1h4Q60641 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Nr1h4Q60641 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Nr1h4Q60641 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Nr1h4Q60641 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Nr1h4Q60641 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Nr1h4Q60641 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Nr1h4Q60641 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Nr1h4Q60641 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Nr1h4Q60641 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Nr1h4Q60641 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Nr1h4Q60641 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC21.85■■□□□ 1.09
Nr1h4Q60641 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Nr1h4Q60641 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
Nr1h4Q60641 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
Nr1h4Q60641 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
Nr1h4Q60641 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Nr1h4Q60641 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Nr1h4Q60641 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Nr1h4Q60641 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Nr1h4Q60641 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
Nr1h4Q60641 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Nr1h4Q60641 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Nr1h4Q60641 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.8■■□□□ 1.08
Nr1h4Q60641 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Nr1h4Q60641 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Nr1h4Q60641 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Nr1h4Q60641 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Nr1h4Q60641 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms