Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC24.75■■□□□ 1.55
Shmt1P50431 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Shmt1P50431 AC167019.3-201ENSMUST00000228225 1266 ntBASIC24.75■■□□□ 1.55
Shmt1P50431 Gm14121-201ENSMUST00000121441 1380 ntBASIC24.75■■□□□ 1.55
Shmt1P50431 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC24.75■■□□□ 1.55
Shmt1P50431 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
Shmt1P50431 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Shmt1P50431 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC24.74■■□□□ 1.55
Shmt1P50431 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Shmt1P50431 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
Shmt1P50431 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Shmt1P50431 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC24.74■■□□□ 1.55
Shmt1P50431 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Shmt1P50431 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
Shmt1P50431 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC24.72■■□□□ 1.55
Shmt1P50431 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Shmt1P50431 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC24.71■■□□□ 1.55
Shmt1P50431 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
Shmt1P50431 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
Shmt1P50431 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC24.7■■□□□ 1.54
Shmt1P50431 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC24.7■■□□□ 1.54
Shmt1P50431 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
Shmt1P50431 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Shmt1P50431 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC24.69■■□□□ 1.54
Shmt1P50431 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Shmt1P50431 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
Shmt1P50431 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
Shmt1P50431 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Shmt1P50431 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC24.67■■□□□ 1.54
Shmt1P50431 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
Shmt1P50431 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Shmt1P50431 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC24.67■■□□□ 1.54
Shmt1P50431 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
Shmt1P50431 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Shmt1P50431 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
Shmt1P50431 Gm4799-201ENSMUST00000095396 657 ntBASIC24.66■■□□□ 1.54
Shmt1P50431 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Shmt1P50431 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Shmt1P50431 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC24.65■■□□□ 1.54
Shmt1P50431 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Shmt1P50431 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Shmt1P50431 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Shmt1P50431 AC122428.3-201ENSMUST00000215551 2290 ntBASIC24.63■■□□□ 1.53
Shmt1P50431 Gm6311-201ENSMUST00000073790 878 ntBASIC24.63■■□□□ 1.53
Shmt1P50431 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
Shmt1P50431 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC24.62■■□□□ 1.53
Shmt1P50431 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
Shmt1P50431 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
Shmt1P50431 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
Shmt1P50431 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Shmt1P50431 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
Shmt1P50431 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Shmt1P50431 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC24.6■■□□□ 1.53
Shmt1P50431 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Shmt1P50431 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC24.59■■□□□ 1.53
Shmt1P50431 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Shmt1P50431 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Shmt1P50431 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC24.58■■□□□ 1.53
Shmt1P50431 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC24.58■■□□□ 1.53
Shmt1P50431 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC24.58■■□□□ 1.53
Shmt1P50431 Gm45364-201ENSMUST00000210883 159 ntBASIC24.58■■□□□ 1.53
Shmt1P50431 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC24.58■■□□□ 1.53
Shmt1P50431 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Shmt1P50431 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
Shmt1P50431 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.57■■□□□ 1.52
Shmt1P50431 Gm11175-201ENSMUST00000116172 543 ntBASIC24.57■■□□□ 1.52
Shmt1P50431 Mir3960-201ENSMUST00000198213 73 ntBASIC24.57■■□□□ 1.52
Shmt1P50431 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Shmt1P50431 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Shmt1P50431 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Shmt1P50431 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Shmt1P50431 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC24.55■■□□□ 1.52
Shmt1P50431 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Shmt1P50431 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
Shmt1P50431 AC154454.1-201ENSMUST00000225253 216 ntBASIC24.54■■□□□ 1.52
Shmt1P50431 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Shmt1P50431 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Shmt1P50431 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
Shmt1P50431 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Shmt1P50431 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Shmt1P50431 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Shmt1P50431 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Shmt1P50431 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC24.51■■□□□ 1.51
Shmt1P50431 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Shmt1P50431 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Shmt1P50431 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Shmt1P50431 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.5■■□□□ 1.51
Shmt1P50431 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
Shmt1P50431 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Shmt1P50431 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Shmt1P50431 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Shmt1P50431 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Shmt1P50431 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Shmt1P50431 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Shmt1P50431 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
Shmt1P50431 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Shmt1P50431 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Shmt1P50431 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Shmt1P50431 Pkd1-207ENSMUST00000228550 1050 ntBASIC24.47■■□□□ 1.51
Shmt1P50431 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms