Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Slc6a1P31648 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Slc6a1P31648 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Slc6a1P31648 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Slc6a1P31648 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Slc6a1P31648 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
Slc6a1P31648 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Slc6a1P31648 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Slc6a1P31648 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.89■□□□□ 0.77
Slc6a1P31648 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Slc6a1P31648 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Slc6a1P31648 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC19.88■□□□□ 0.77
Slc6a1P31648 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Slc6a1P31648 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Slc6a1P31648 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Slc6a1P31648 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Slc6a1P31648 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Slc6a1P31648 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Slc6a1P31648 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Slc6a1P31648 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Slc6a1P31648 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Slc6a1P31648 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Slc6a1P31648 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Slc6a1P31648 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Slc6a1P31648 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Slc6a1P31648 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Slc6a1P31648 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Slc6a1P31648 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Slc6a1P31648 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Slc6a1P31648 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
Slc6a1P31648 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Slc6a1P31648 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Slc6a1P31648 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Slc6a1P31648 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Slc6a1P31648 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Slc6a1P31648 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Slc6a1P31648 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Slc6a1P31648 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Slc6a1P31648 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Slc6a1P31648 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Slc6a1P31648 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Slc6a1P31648 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
Slc6a1P31648 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Slc6a1P31648 H3f3aos-201ENSMUST00000097448 2905 ntBASIC19.79■□□□□ 0.76
Slc6a1P31648 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Slc6a1P31648 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
Slc6a1P31648 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Slc6a1P31648 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Slc6a1P31648 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Slc6a1P31648 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Slc6a1P31648 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Slc6a1P31648 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Slc6a1P31648 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Slc6a1P31648 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
Slc6a1P31648 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Slc6a1P31648 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Slc6a1P31648 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Slc6a1P31648 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
Slc6a1P31648 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Slc6a1P31648 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Slc6a1P31648 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.76■□□□□ 0.75
Slc6a1P31648 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Slc6a1P31648 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Slc6a1P31648 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC19.76■□□□□ 0.75
Slc6a1P31648 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC19.75■□□□□ 0.75
Slc6a1P31648 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.75■□□□□ 0.75
Slc6a1P31648 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Slc6a1P31648 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Slc6a1P31648 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Slc6a1P31648 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Slc6a1P31648 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Slc6a1P31648 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Slc6a1P31648 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
Slc6a1P31648 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Slc6a1P31648 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Slc6a1P31648 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Slc6a1P31648 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Slc6a1P31648 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.72■□□□□ 0.75
Slc6a1P31648 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 Gm13042-201ENSMUST00000119244 1955 ntBASIC19.72■□□□□ 0.75
Slc6a1P31648 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC19.72■□□□□ 0.75
Slc6a1P31648 Gm45855-201ENSMUST00000212546 880 ntBASIC19.72■□□□□ 0.75
Slc6a1P31648 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Slc6a1P31648 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Slc6a1P31648 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Slc6a1P31648 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Slc6a1P31648 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Slc6a1P31648 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Slc6a1P31648 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Slc6a1P31648 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Slc6a1P31648 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.69■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 10.3 ms