Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC068647.1-201ENST00000489539 2265 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL445523.1-201ENST00000451184 1362 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 MFSD8-233ENST00000641482 4860 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC007785.2-201ENST00000598627 1916 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 MIR30E-201ENST00000362104 92 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 Y_RNA.46-201ENST00000362695 102 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 RNU5F-6P-201ENST00000362979 116 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 SNORD46.1-201ENST00000364139 104 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 RNU6-741P-201ENST00000383889 107 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 RNU6-809P-201ENST00000384461 107 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 RNA5SP44-201ENST00000410446 133 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC078974.1-201ENST00000411597 223 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 RPS7P13-201ENST00000413955 498 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC017079.2-201ENST00000416102 485 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 SPA17P1-201ENST00000416656 452 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 USP12PX-201ENST00000432383 1057 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 BX679664.1-201ENST00000434429 253 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC108059.3-201ENST00000456388 214 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 RNU6-420P-201ENST00000458780 107 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC021205.2-201ENST00000480069 347 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 KCTD9P5-201ENST00000504141 1170 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 MTND4LP18-201ENST00000526864 291 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC026333.2-201ENST00000542164 106 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 HMGB1P14-201ENST00000557424 591 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 ACTR3BP3-201ENST00000565577 979 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 MIR3186-201ENST00000577404 85 ntBASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
VPS28Q9UK41 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS28Q9UK41 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 SNORA14A-201ENST00000364773 135 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 Y_RNA.560-201ENST00000384689 102 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 MIR34B-201ENST00000385076 84 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 MIR325-201ENST00000385260 98 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RNU6-278P-201ENST00000390945 109 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 RPS20P2-201ENST00000402520 389 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL354719.1-201ENST00000406535 843 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RNU6-920P-201ENST00000410926 92 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL513331.1-201ENST00000411908 397 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 RPS15AP6-201ENST00000420703 385 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL451054.2-201ENST00000420896 202 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 Z99497.1-201ENST00000421282 135 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC097713.2-201ENST00000430199 356 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RPL23AP69-201ENST00000431134 458 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL512844.2-201ENST00000433990 593 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC098826.2-201ENST00000452011 651 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 MTCO2P6-201ENST00000463134 685 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RPF2P2-201ENST00000504693 896 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 FCF1P8-201ENST00000510322 597 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 OR5BM1P-201ENST00000512021 366 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RNU6-390P-201ENST00000516259 103 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 RNU6-759P-201ENST00000516740 103 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC026407.1-201ENST00000518369 204 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 IGHV3-76-201ENST00000522465 295 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 DEFB108A-201ENST00000530110 222 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 NCAPGP2-201ENST00000557911 754 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AL356432.3-201ENST00000568952 465 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 BNIP3P22-201ENST00000593399 556 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC079089.3-201ENST00000603094 673 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC090970.3-201ENST00000612566 866 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 AC004696.1-201ENST00000614345 607 ntBASIC3.52□□□□□ -1.85
VPS28Q9UK41 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS28Q9UK41 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS28Q9UK41 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms