Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 RPL7P36-201ENST00000444633 681 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 MTND2P4-201ENST00000445034 1004 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 HMGN2P7-201ENST00000456186 273 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC109486.1-201ENST00000486833 374 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 RN7SL20P-201ENST00000488827 297 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 VN1R104P-201ENST00000505115 1009 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 RNA5SP341-201ENST00000516261 117 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 ZNF192P1-203ENST00000565888 810 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC091489.2-201ENST00000566263 604 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 FAM60BP-201ENST00000578364 658 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AP005136.1-201ENST00000579765 429 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 PIGPP4-201ENST00000584447 307 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC105129.3-201ENST00000605455 485 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC005000.2-201ENST00000605468 310 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC012443.1-201ENST00000605605 231 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC080013.6-201ENST00000606185 215 ntBASIC3.84□□□□□ -1.79
USP44Q9H0E7 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.84□□□□□ -1.79
USP44Q9H0E7 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
USP44Q9H0E7 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.8
USP44Q9H0E7 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
USP44Q9H0E7 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.8
USP44Q9H0E7 AL672296.1-201ENST00000427780 2158 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 MIR22-201ENST00000362190 85 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 MIR135A2-201ENST00000384854 100 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 RPL31P12-201ENST00000422587 358 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 RPL27AP8-201ENST00000424277 446 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP44Q9H0E7 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 RPL36AP33-201ENST00000450395 310 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 RPL23AP31-201ENST00000456160 467 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 RPL27AP5-201ENST00000469428 449 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC116337.2-201ENST00000477662 156 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 LEF1-218ENST00000512172 598 ntTSL 2 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 RNU6-1003P-201ENST00000517099 105 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC034268.2-201ENST00000571784 482 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AF131215.7-201ENST00000602443 707 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL358072.1-201ENST00000604156 575 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL022099.1-201ENST00000604551 712 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 OR2AS2P-201ENST00000606902 342 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL158211.4-201ENST00000606988 584 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 ATP5A1P2-202ENST00000616464 443 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AC007318.2-201ENST00000620999 243 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 AP003399.1-201ENST00000637534 361 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
USP44Q9H0E7 MTND4P16-201ENST00000466108 1367 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 AL353743.1-202ENST00000431724 1695 ntBASIC3.83□□□□□ -1.8
USP44Q9H0E7 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
USP44Q9H0E7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 RIOK3P1-201ENST00000418778 1528 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 ATP8A2P3-201ENST00000426792 1536 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC005832.2-201ENST00000538921 1430 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 AL513185.3-201ENST00000433335 1300 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 U3.11-201ENST00000364476 212 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 RNU6-637P-201ENST00000384050 107 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 RPL7P25-201ENST00000404151 721 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 RPL7P8-201ENST00000411964 730 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC245291.1-201ENST00000419501 328 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 RPL21P32-201ENST00000419877 477 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC098826.1-201ENST00000433943 471 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC118469.1-201ENST00000442943 488 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 CEACAMP4-201ENST00000457676 421 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC105914.1-201ENST00000511798 226 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
USP44Q9H0E7 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC083760.1-201ENST00000589621 670 ntBASIC3.82□□□□□ -1.8
USP44Q9H0E7 AC103710.4-201ENST00000609301 899 ntBASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms