Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC017071.1-201ENST00000564407 2204 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 MT-TH-201ENST00000387441 69 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 U8.14-201ENST00000390843 143 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 EI24P2-201ENST00000397776 1076 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 UBA52P6-201ENST00000399822 382 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 SKINT1L-201ENST00000401057 817 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AL122016.1-201ENST00000403365 367 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 RNU2-43P-201ENST00000410306 190 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 RPL17P12-201ENST00000413391 526 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 MTND2P4-201ENST00000445034 1004 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC009961.3-201ENST00000449832 765 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC092754.2-201ENST00000463506 460 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 RPL23AP41-201ENST00000484754 458 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 FCF1P3-201ENST00000496394 590 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 UBE2L4-201ENST00000587688 464 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 TPMTP1-201ENST00000592307 737 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC010620.1-201ENST00000601088 1102 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 Z94722.1-201ENST00000604328 474 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC073657.2-201ENST00000605661 303 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC091965.4-201ENST00000607691 587 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AL158801.5-201ENST00000623123 465 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 AC110801.1-201ENST00000623590 212 ntBASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC3Q9BQI4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
CCDC3Q9BQI4 AC009812.4-201ENST00000569134 1805 ntBASIC3.21□□□□□ -1.89
CCDC3Q9BQI4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC021755.1-201ENST00000559747 1447 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 Y_RNA.77-201ENST00000362962 107 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RNU5F-6P-201ENST00000362979 116 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RNU6-1078P-201ENST00000364522 103 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SNORD116-9-201ENST00000384000 95 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SNORD116-3-201ENST00000384287 95 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SNORD116-7-201ENST00000384404 95 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SNORD116-5-201ENST00000384462 95 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 U3.26-201ENST00000391236 204 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC109780.2-201ENST00000413467 845 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 NPM1P11-201ENST00000417106 855 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 CYCSP46-201ENST00000423569 204 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 BX119904.4-201ENST00000424402 301 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC129850.1-201ENST00000436203 508 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RPL35AP22-201ENST00000436855 335 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 COX6CP2-201ENST00000444980 225 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 GDI2P2-201ENST00000445131 608 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RNA5SP269-201ENST00000459032 137 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RPL27AP5-201ENST00000469428 449 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AP000797.1-201ENST00000478870 387 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 RNA5SP341-201ENST00000516261 117 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 SNORA31.8-201ENST00000516327 108 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 HIGD1AP1-201ENST00000550979 275 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC005476.1-201ENST00000554427 397 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 ACTR3BP3-201ENST00000565577 979 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 OR4K8P-201ENST00000578842 1048 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AP001429.1-201ENST00000602568 530 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC012443.1-201ENST00000605605 231 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AL158211.4-201ENST00000606988 584 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AL138713.1-201ENST00000624026 2130 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 AC093591.3-201ENST00000634516 308 ntBASIC3.21□□□□□ -1.9
CCDC3Q9BQI4 PABPC1P9-201ENST00000426076 1612 ntBASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms