Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.4□□□□□ -1.71
NUP88Q99567 RPL21P12-201ENST00000559810 515 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 MIR5187-201ENST00000583479 76 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 Z84480.1-201ENST00000605131 311 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 HMGB1P50-201ENST00000605814 607 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 SNORA62.6-201ENST00000606322 83 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 RNU1-30P-201ENST00000606575 163 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 CR381653.2-201ENST00000624041 768 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.4□□□□□ -1.71
NUP88Q99567 MIR4275-201ENST00000636486 87 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
NUP88Q99567 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
NUP88Q99567 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.4□□□□□ -1.71
NUP88Q99567 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
NUP88Q99567 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
NUP88Q99567 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
NUP88Q99567 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC4.4□□□□□ -1.71
NUP88Q99567 AC092326.2-201ENST00000624772 1561 ntBASIC4.4□□□□□ -1.71
NUP88Q99567 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NUP88Q99567 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
NUP88Q99567 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
NUP88Q99567 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NUP88Q99567 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
NUP88Q99567 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.39□□□□□ -1.71
NUP88Q99567 RNA5SP119-201ENST00000362715 117 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 SNORD56.2-201ENST00000363242 71 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 RN7SKP44-201ENST00000363602 316 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 RNA5SP387-201ENST00000364226 106 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 SNORA51.2-201ENST00000364595 132 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NUP88Q99567 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.39□□□□□ -1.71
NUP88Q99567 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.39□□□□□ -1.71
NUP88Q99567 MTCO1P39-201ENST00000426148 480 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 HMGN2P31-201ENST00000432430 273 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 RPS6P12-201ENST00000432491 726 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 KCTD9P3-201ENST00000434597 1169 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 MTATP6P13-201ENST00000438531 667 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC005094.1-201ENST00000440420 368 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 PSPHP1-201ENST00000450062 261 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC004924.1-201ENST00000480160 781 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC079382.1-201ENST00000493346 557 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 HMGB1P22-201ENST00000505315 124 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 HMGB1P29-201ENST00000505659 499 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC023141.12-201ENST00000512399 199 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.39□□□□□ -1.71
NUP88Q99567 RNU2-10P-201ENST00000516375 211 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 RNU6-1220P-201ENST00000517126 108 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC128657.1-201ENST00000549459 145 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.39□□□□□ -1.71
NUP88Q99567 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC027807.1-201ENST00000559921 996 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC008739.3-201ENST00000603262 127 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC012443.1-201ENST00000605605 231 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC126118.1-201ENST00000607744 628 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AF250324.2-201ENST00000608299 610 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC092794.1-201ENST00000612734 582 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AL360181.4-201ENST00000621752 134 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC124864.2-201ENST00000624736 186 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
NUP88Q99567 AC138915.3-201ENST00000562908 1389 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 AC106871.1-201ENST00000568324 3102 ntBASIC4.39□□□□□ -1.71
NUP88Q99567 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
NUP88Q99567 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.38□□□□□ -1.71
NUP88Q99567 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 Y_RNA.1-201ENST00000352915 104 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 SNORA63.1-201ENST00000362493 131 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 RNA5SP322-201ENST00000363617 119 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 TXNP7-201ENST00000406296 293 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AL603766.1-201ENST00000407763 664 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC4.38□□□□□ -1.71
NUP88Q99567 PPP1R11P2-201ENST00000423543 382 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.38□□□□□ -1.71
NUP88Q99567 MTCO2P11-201ENST00000431069 680 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 MTCO3P45-201ENST00000443036 613 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 RPS3AP14-201ENST00000483907 780 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AC108860.1-201ENST00000484521 383 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.38□□□□□ -1.71
NUP88Q99567 HMGN1P11-201ENST00000508668 303 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AC005921.1-201ENST00000510589 286 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 RNU7-51P-201ENST00000516560 62 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC4.38□□□□□ -1.71
NUP88Q99567 MTND1P5-201ENST00000517906 940 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 ERHP1-201ENST00000523006 310 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC4.38□□□□□ -1.71
NUP88Q99567 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC4.38□□□□□ -1.71
NUP88Q99567 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.38□□□□□ -1.71
NUP88Q99567 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.38□□□□□ -1.71
NUP88Q99567 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 UBE3AP2-201ENST00000429033 2259 ntBASIC4.38□□□□□ -1.71
NUP88Q99567 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NUP88Q99567 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms