Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC011825.1-201ENST00000484967 388 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC024589.1-201ENST00000512207 263 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC124947.2-202ENST00000552735 133 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 OR4H12P-201ENST00000556269 907 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AMZ2P1-203ENST00000565833 850 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 U73023.1-201ENST00000603134 700 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC012119.1-201ENST00000603184 222 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL391834.2-201ENST00000609982 546 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 AC099786.3-201ENST00000565735 1410 ntBASIC3.25□□□□□ -1.89
CCDC43Q96MW1 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC3.25□□□□□ -1.89
CCDC43Q96MW1 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 RNU6-744P-201ENST00000365557 107 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 RNU6-1316P-201ENST00000384242 108 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 NDUFB4P4-201ENST00000404822 243 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 COTL1P1-201ENST00000422309 375 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 HMGN2P30-201ENST00000423237 256 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC092648.1-201ENST00000425870 423 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 SNRPEP7-201ENST00000438350 220 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC112653.1-201ENST00000443851 386 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC006386.2-201ENST00000624491 75 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC012005.1-201ENST00000624575 75 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 AC110079.1-202ENST00000635213 138 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 DDX43P2-201ENST00000604753 1354 ntBASIC3.24□□□□□ -1.89
CCDC43Q96MW1 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC43Q96MW1 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RNU6-777P-201ENST00000364265 104 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RNA5SP139-201ENST00000364340 117 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RNU6-1035P-201ENST00000384477 107 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RNU6-1242P-201ENST00000391052 103 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 ATG3P1-201ENST00000419507 911 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 ARPC3P1-201ENST00000437218 533 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 NIPA2P5-201ENST00000452282 464 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AL109741.2-201ENST00000455561 343 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RPL21P41-201ENST00000459863 264 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 LARP1BP2-201ENST00000486594 519 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 RNU6-1282P-201ENST00000516735 96 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 HMGB1P6-201ENST00000569046 646 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC005951.2-201ENST00000576282 495 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC090186.1-201ENST00000605991 572 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AL049641.1-201ENST00000441055 1948 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 AP003122.5-201ENST00000527668 3766 ntBASIC3.23□□□□□ -1.89
CCDC43Q96MW1 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 SDAD1P2-201ENST00000441308 2028 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 SNORA23-201ENST00000365128 182 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 RNU1-39P-201ENST00000383897 165 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 MIR181B1-201ENST00000385240 110 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 RNU6-516P-201ENST00000411381 104 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 TPMTP3-201ENST00000411928 735 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 Z85995.1-201ENST00000415547 335 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC129850.1-201ENST00000436203 508 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 PTENP1-201ENST00000447117 1215 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC43Q96MW1 RPS29P26-201ENST00000477483 171 ntBASIC3.22□□□□□ -1.89
CCDC43Q96MW1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms