Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AL121776.1-201ENST00000429337 372 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC011816.1-201ENST00000441346 546 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC104634.1-201ENST00000452720 462 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ANP32BP2-201ENST00000454525 545 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RPL23AP24-201ENST00000458203 385 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RPL23AP45-201ENST00000476406 468 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 HMGN2P13-201ENST00000476476 274 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RN7SL727P-201ENST00000482164 296 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RN7SL447P-201ENST00000494711 245 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AL136038.1-201ENST00000497246 351 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 RN7SKP289-201ENST00000517244 295 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AC099506.2-201ENST00000623074 221 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 U6.99-201ENST00000637524 83 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AL049767.1-202ENST00000637826 242 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.14□□□□□ -1.75
CCDC140Q96MF4 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC091812.1-201ENST00000432235 1948 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 OR9K1P-202ENST00000641111 3217 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RNU6-50P-201ENST00000362356 103 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RNU1-19P-201ENST00000363306 165 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RNU6-99P-201ENST00000364721 107 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.557-201ENST00000384680 107 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 MIR143-201ENST00000385300 106 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 SNORA11B-201ENST00000408175 129 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC096644.2-201ENST00000429278 159 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RPL19P16-201ENST00000433839 588 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 SNRPEP9-201ENST00000436794 238 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC004938.1-201ENST00000438468 308 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 DAP3P1-201ENST00000441522 278 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 IPO7P1-201ENST00000442031 636 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 OR1H1P-201ENST00000448731 937 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 NDUFB1P2-201ENST00000449477 176 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC092798.1-201ENST00000458542 409 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC245028.2-201ENST00000458673 253 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC128713.1-201ENST00000471495 306 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC105758.1-201ENST00000506038 399 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 CBX3P8-201ENST00000532412 525 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AL117187.1-201ENST00000555482 181 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 RPL10P14-201ENST00000565265 298 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC136601.2-201ENST00000604356 474 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC011626.1-201ENST00000604710 562 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 FP236240.3-201ENST00000623061 327 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 Z69720.2-201ENST00000624755 279 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC119674.1-207ENST00000641355 633 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AC005592.1-201ENST00000566527 1640 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 AL158163.1-201ENST00000603915 1649 ntBASIC4.13□□□□□ -1.75
CCDC140Q96MF4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC140Q96MF4 Y_RNA.389-201ENST00000383924 113 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 RNU6-166P-201ENST00000384371 107 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 RNU6-140P-201ENST00000384566 108 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MIR568-201ENST00000385036 95 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 MIR34A-201ENST00000385130 110 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 SNORA48.4-201ENST00000391089 134 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 SNORA40C-201ENST00000391285 128 ntBASIC4.12□□□□□ -1.75
CCDC140Q96MF4 AC009804.1-201ENST00000400949 179 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms