Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS50Q96JG6 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
VPS50Q96JG6 AF127577.6-201ENST00000623352 2191 ntBASIC3.94□□□□□ -1.78
VPS50Q96JG6 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC3.94□□□□□ -1.78
VPS50Q96JG6 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.94□□□□□ -1.78
VPS50Q96JG6 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
VPS50Q96JG6 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
VPS50Q96JG6 USP8P1-201ENST00000494673 3183 ntBASIC3.94□□□□□ -1.78
VPS50Q96JG6 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC138915.3-201ENST00000562908 1389 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNU1-18P-201ENST00000363062 164 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNU5E-8P-201ENST00000363502 116 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNU6-1085P-201ENST00000363576 107 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 SNORA51.2-201ENST00000364595 132 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNA5SP479-201ENST00000364858 117 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 MIR1-2-201ENST00000384961 85 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 PTMAP5-201ENST00000393073 333 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNU6-516P-201ENST00000411381 104 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC022028.1-201ENST00000412054 408 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 HMGN1P24-201ENST00000412282 298 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 MTATP6P18-201ENST00000417994 673 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 MTCO1P20-201ENST00000425366 358 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC011742.1-201ENST00000431448 434 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AL136097.1-201ENST00000456945 913 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC025678.1-201ENST00000567861 338 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 MTCO3P24-201ENST00000572729 782 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC006504.3-201ENST00000586818 523 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 SNRPGP15-201ENST00000600149 222 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 AL354984.3-201ENST00000604803 325 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 IGHV3-29-201ENST00000604817 344 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 AC008277.2-201ENST00000605196 797 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.93□□□□□ -1.78
VPS50Q96JG6 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
VPS50Q96JG6 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.93□□□□□ -1.78
VPS50Q96JG6 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS50Q96JG6 MTCO1P9-201ENST00000505577 1534 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS50Q96JG6 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS50Q96JG6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNY1P12-201ENST00000364251 105 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNU6-335P-201ENST00000364563 113 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 Y_RNA.303-201ENST00000364998 94 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNU2-9P-201ENST00000410194 145 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 RPL23AP20-201ENST00000447965 421 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 MTND1P9-201ENST00000453775 944 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 RPL36AP13-201ENST00000457490 317 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNU6-420P-201ENST00000458780 107 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNU7-59P-201ENST00000459101 61 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL049714.1-201ENST00000466686 347 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL049830.2-201ENST00000480072 201 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
VPS50Q96JG6 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 RNU6-64P-201ENST00000517119 105 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 MTND1P35-201ENST00000526739 508 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 DEFB108D-201ENST00000527787 222 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AP005205.1-201ENST00000563503 508 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC104458.1-201ENST00000608243 463 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC004908.2-201ENST00000609090 574 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC112200.1-201ENST00000625015 234 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AC019226.1-201ENST00000625666 515 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL773545.4-201ENST00000637262 310 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.92□□□□□ -1.78
VPS50Q96JG6 AL513478.4-201ENST00000641636 310 ntBASIC3.92□□□□□ -1.78
VPS50Q96JG6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.92□□□□□ -1.78
VPS50Q96JG6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.92□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms