Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 RPL21P10-201ENST00000463521 490 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 RPL7P49-201ENST00000471402 708 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 AP000563.1-201ENST00000490865 758 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 FCF1P8-201ENST00000510322 597 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC110760.3-202ENST00000515177 371 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.21□□□□□ -1.9
VMP1Q96GC9 UBTFL10-201ENST00000528532 562 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC011611.1-201ENST00000552179 197 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 FTX_3.1-201ENST00000610451 147 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 MIR7975-201ENST00000619350 68 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
VMP1Q96GC9 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 AC008264.2-201ENST00000610193 3731 ntBASIC3.21□□□□□ -1.9
VMP1Q96GC9 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.21□□□□□ -1.9
VMP1Q96GC9 CR848007.1-201ENST00000442354 1699 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.2□□□□□ -1.9
VMP1Q96GC9 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VMP1Q96GC9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
VMP1Q96GC9 RNU1-33P-201ENST00000364249 162 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 MIR490-201ENST00000384865 128 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 MIR34B-201ENST00000385076 84 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 RNU6-757P-201ENST00000410334 100 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL359704.1-201ENST00000411586 781 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC006960.1-201ENST00000419980 153 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC093151.1-201ENST00000427711 313 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL117351.1-201ENST00000438864 766 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 FGF7P5-201ENST00000441829 291 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 RPL27AP5-201ENST00000469428 449 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL160314.1-201ENST00000490836 438 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC114786.4-201ENST00000508771 728 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC114797.1-201ENST00000514003 728 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 MTND5P4-201ENST00000514978 288 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC087465.1-201ENST00000560574 245 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL355877.2-201ENST00000603670 358 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC136601.2-201ENST00000604356 474 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC239868.4-201ENST00000608318 671 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC024560.3-201ENST00000608482 349 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AL161431.1-201ENST00000618966 4205 ntBASIC3.2□□□□□ -1.9
VMP1Q96GC9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
VMP1Q96GC9 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC032011.1-201ENST00000611703 1549 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 PABPC1P9-201ENST00000426076 1612 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
VMP1Q96GC9 SNORD46.1-201ENST00000364139 104 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 RPL21P3-201ENST00000395517 478 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 RNA5SP44-201ENST00000410446 133 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 GTF2IP20-201ENST00000431663 360 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 USP12PX-201ENST00000432383 1057 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 RSL24D1P3-201ENST00000449255 495 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 RPL23AP35-201ENST00000451906 501 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC146507.2-201ENST00000460608 476 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC008481.1-201ENST00000463278 396 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 MRPS17P3-201ENST00000465453 385 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 SUMO2P6-201ENST00000505273 288 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 SNORA70.19-201ENST00000516717 90 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 SUB1P1-201ENST00000524415 382 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms