Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AC090312.2-201ENST00000582687 378 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.33□□□□□ -1.72
CHFRQ96EP1 TPMTP1-201ENST00000592307 737 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 RNU6-87P-201ENST00000607561 108 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 AC005014.2-201ENST00000607795 599 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC4.33□□□□□ -1.72
CHFRQ96EP1 AC079597.1-201ENST00000624306 508 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 AC009161.2-201ENST00000624626 138 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
CHFRQ96EP1 FAM91A3P-201ENST00000456826 2544 ntBASIC4.33□□□□□ -1.72
CHFRQ96EP1 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4.33□□□□□ -1.72
CHFRQ96EP1 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 ERCC6-202ENST00000374127 1782 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 OR4G1P-203ENST00000641984 1631 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 NACAP2-201ENST00000318548 624 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 RNU6-1120P-201ENST00000362988 108 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 RNU6-702P-201ENST00000364982 107 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 Y_RNA.476-201ENST00000384347 108 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 TMSB4XP8-201ENST00000402089 135 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 MIR1305-201ENST00000408300 86 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 RNU6-1304P-201ENST00000411374 106 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 TMSB4XP6-201ENST00000415187 135 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 TMSB4XP1-201ENST00000424567 135 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 BNIP3P2-201ENST00000441221 577 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 U8.20-201ENST00000459445 131 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC097493.1-201ENST00000463958 372 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC022034.3-201ENST00000471393 478 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 VN1R17P-201ENST00000472048 1090 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC012181.1-201ENST00000479895 423 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 RN7SL604P-201ENST00000492589 296 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC108022.1-201ENST00000493466 478 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 RPL38P4-201ENST00000502376 214 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 TTC39CP1-201ENST00000512513 755 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 NPM1P41-201ENST00000512920 831 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 Vault.3-201ENST00000516676 95 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC023442.1-201ENST00000531247 422 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC090751.1-201ENST00000566966 267 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 MIR3167-201ENST00000579623 85 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 AC244517.12-201ENST00000623581 663 ntBASIC4.32□□□□□ -1.72
CHFRQ96EP1 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.32□□□□□ -1.72
CHFRQ96EP1 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
CHFRQ96EP1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AC073343.1-201ENST00000328239 651 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 SNRPEP3-201ENST00000338402 276 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RNU1-108P-201ENST00000362556 161 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 Y_RNA.47-201ENST00000362697 108 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 SNORA62.3-201ENST00000365110 153 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 MIR670-201ENST00000390142 98 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RPL23AP32-201ENST00000395315 459 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 LAP3P1-201ENST00000403648 294 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 MIR1303-201ENST00000408625 86 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RNU6-985P-201ENST00000410182 104 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RN7SKP266-201ENST00000410232 287 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 RN7SKP159-201ENST00000410657 292 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 Y_RNA.615-201ENST00000410769 117 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CHFRQ96EP1 AL451054.2-201ENST00000420896 202 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 EIF4EP1-201ENST00000422311 642 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 DUTP6-201ENST00000425573 462 ntBASIC4.31□□□□□ -1.72
CHFRQ96EP1 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.31□□□□□ -1.72
CHFRQ96EP1 ATP5JP1-201ENST00000431631 322 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms