Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CLIP3Q96DZ5 MTND4P35-201ENST00000604257 1375 ntBASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.7
CLIP3Q96DZ5 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 OR1S2-201ENST00000302592 978 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 RNA5SP447-201ENST00000363749 119 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 SNORA4.3-201ENST00000365564 137 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 RNU6-76P-201ENST00000384060 104 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MIR559-201ENST00000385188 96 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 RN7SKP159-201ENST00000410657 292 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AL161631.1-201ENST00000417933 486 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MTCYBP8-201ENST00000422855 651 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 EIF4HP2-201ENST00000424380 563 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 IFNA20P-201ENST00000436840 528 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 HMGB1P18-201ENST00000438801 619 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC005094.1-201ENST00000440420 368 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 CACYBPP2-201ENST00000453625 678 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 RPL23AP31-201ENST00000456160 467 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 RNA5SP337-201ENST00000517007 109 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AP003072.2-201ENST00000527756 676 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 OR5D17P-201ENST00000531492 978 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC135001.1-201ENST00000544546 283 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MIR4742-201ENST00000581069 85 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC124303.1-201ENST00000605703 360 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC020634.1-201ENST00000608701 549 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AL355810.1-201ENST00000614629 552 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AL713922.2-201ENST00000619384 716 ntBASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
CLIP3Q96DZ5 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 OR56B2P-202ENST00000641377 2453 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC007685.1-201ENST00000329806 452 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 Y_RNA.315-201ENST00000365117 102 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNU6-43P-201ENST00000384302 107 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 U3.22-201ENST00000391120 215 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNU6-510P-201ENST00000391239 108 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AP000580.1-201ENST00000404439 358 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 HDGFP1-201ENST00000405943 252 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNA5SP107-201ENST00000411358 122 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RPEP3-201ENST00000425462 676 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RPS12P10-201ENST00000427031 377 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 VDAC1P3-201ENST00000434069 851 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AL138799.3-201ENST00000438968 350 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 SNRPGP5-201ENST00000456003 220 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC130509.1-201ENST00000464158 433 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RPS23P7-201ENST00000466210 444 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC015795.1-201ENST00000513669 327 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 SNORD60.2-201ENST00000516883 86 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNU6-64P-201ENST00000517119 105 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 RNU6-1220P-201ENST00000517126 108 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AC011979.2-201ENST00000527568 352 ntBASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC4.39□□□□□ -1.71
CLIP3Q96DZ5 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 380.6 ms