Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RNA5SP139-201ENST00000364340 117 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 RNU6-198P-201ENST00000384258 104 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 MIR491-201ENST00000384877 84 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 RNA5SP424-201ENST00000390988 115 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 RNU2-33P-201ENST00000410344 192 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 USP9YP26-201ENST00000421008 661 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC091390.3-201ENST00000426478 338 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 NDUFB1P1-201ENST00000435191 180 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC092641.1-201ENST00000440229 772 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 PIGFP3-201ENST00000441918 722 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 RPL21P23-201ENST00000446654 460 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 MTND4LP3-201ENST00000468320 276 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AP002884.2-201ENST00000471647 395 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC010631.1-201ENST00000474150 156 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC068724.1-201ENST00000487100 792 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC006483.1-201ENST00000487308 313 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 MTND1P22-201ENST00000510572 951 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 MTND4LP18-201ENST00000526864 291 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 OR5B10P-201ENST00000532869 642 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 GTF2IP22-201ENST00000554443 182 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL357559.1-201ENST00000622228 274 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL356266.1-201ENST00000623311 483 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC079416.3-201ENST00000624479 549 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC127502.3-201ENST00000636170 1206 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 AC091564.4-201ENST00000533934 2194 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 PAPPA-AS1-201ENST00000445861 2450 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
SKA1Q96BD8 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
SKA1Q96BD8 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
SKA1Q96BD8 AL021368.2-201ENST00000606125 5352 ntBASIC3.7□□□□□ -1.82
SKA1Q96BD8 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC010680.1-201ENST00000590024 3590 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA1Q96BD8 RNA5SP51-201ENST00000364750 119 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL136116.1-201ENST00000403591 381 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 RNA5SP107-201ENST00000411358 122 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC068533.1-201ENST00000418542 415 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC092047.1-201ENST00000424997 240 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA1Q96BD8 RPL22P17-201ENST00000438729 315 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC005094.1-201ENST00000440420 368 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL049734.2-201ENST00000441066 616 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 BNIP3P2-201ENST00000441221 577 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 GAPDHP27-201ENST00000447427 1020 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC073387.1-201ENST00000453261 709 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 KC877373.1-201ENST00000479066 408 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 FCF1P3-201ENST00000496394 590 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL358832.1-201ENST00000497800 389 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC020893.1-201ENST00000502452 580 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 MTND5P13-201ENST00000513046 1079 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 NDUFB9P3-201ENST00000521269 501 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC007115.1-201ENST00000546853 234 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC008015.1-201ENST00000555505 465 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC012468.1-201ENST00000604888 430 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL160281.1-201ENST00000605307 311 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC018638.7-201ENST00000605836 1114 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL355472.4-201ENST00000610233 626 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA1Q96BD8 MIR7975-201ENST00000619350 68 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 AC092192.1-201ENST00000633154 1018 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 U6.105-201ENST00000637379 88 ntBASIC3.69□□□□□ -1.82
SKA1Q96BD8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
SKA1Q96BD8 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
SKA1Q96BD8 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 GABRG2-229ENST00000641017 3628 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 Y_RNA.46-201ENST00000362695 102 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC078974.1-201ENST00000411597 223 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 RPL31P12-201ENST00000422587 358 ntBASIC3.68□□□□□ -1.82
SKA1Q96BD8 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC3.68□□□□□ -1.82
SKA1Q96BD8 AC073063.1-201ENST00000434352 607 ntBASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms