Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-826P-201ENST00000516827 104 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC009712.1-201ENST00000564938 316 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 U73023.1-201ENST00000603134 700 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC006386.1-201ENST00000619436 415 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC096644.4-201ENST00000563417 2912 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 AC011477.1-204ENST00000623416 1325 ntBASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.1□□□□□ -1.91
CCDC40Q4G0X9 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 RNU6-97P-201ENST00000363387 104 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 RNU6-1207P-201ENST00000384343 107 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 RNU6-1242P-201ENST00000391052 103 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 MTCO2P23-201ENST00000425216 680 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC008571.1-201ENST00000467232 300 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC003982.1-202ENST00000469928 248 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 HMGB1P36-201ENST00000487709 576 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC108729.1-201ENST00000487812 947 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AL049874.1-201ENST00000489560 388 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 RPL30P5-201ENST00000494923 336 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 MEPE-206ENST00000511670 550 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AP003497.1-201ENST00000528472 562 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 AC099654.7-201ENST00000635788 2127 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC40Q4G0X9 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.92
CCDC40Q4G0X9 DDX43P2-201ENST00000604753 1354 ntBASIC3.09□□□□□ -1.92
CCDC40Q4G0X9 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.09□□□□□ -1.92
CCDC40Q4G0X9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 TPTE2P4-201ENST00000258589 1605 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 ZNF29P-201ENST00000225587 168 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 RNU5E-8P-201ENST00000363502 116 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 RNU4-92P-201ENST00000363783 136 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 SNORD21-201ENST00000383953 95 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 SNORA36C-201ENST00000384289 132 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 USP9YP33-201ENST00000412220 421 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 NDUFB4P7-201ENST00000423198 363 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 RPL35AP12-201ENST00000425362 338 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 USP9YP24-201ENST00000434374 697 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 USP9YP35-201ENST00000435696 412 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC093156.1-201ENST00000440382 670 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 USP9YP17-201ENST00000444617 696 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 Z96811.1-201ENST00000445880 108 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 EEF1E1P1-201ENST00000446998 430 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC092155.2-201ENST00000454675 477 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC147055.4-201ENST00000504399 745 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 SNORA9.3-201ENST00000516383 129 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 RN7SKP57-201ENST00000517248 293 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 ZNF861P-201ENST00000588126 639 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC020895.1-201ENST00000595362 272 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC068313.1-201ENST00000604028 1008 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC013553.2-201ENST00000604244 589 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AL136370.1-201ENST00000608166 691 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 AC006378.2-201ENST00000623178 2476 ntBASIC3.08□□□□□ -1.92
CCDC40Q4G0X9 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 RNU6-289P-201ENST00000364093 107 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 MIR514A1-201ENST00000385133 98 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC018630.2-202ENST00000422992 927 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 TAAR7P-201ENST00000436141 242 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AL513043.1-201ENST00000439124 535 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC009237.8-201ENST00000445492 379 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AL009048.1-201ENST00000450437 298 ntBASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC099566.1-212ENST00000451675 799 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC3.07□□□□□ -1.92
CCDC40Q4G0X9 AC104563.1-201ENST00000476147 376 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms