Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC087369.1-201ENST00000520775 996 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AP000857.1-201ENST00000532151 543 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AP002453.2-201ENST00000533503 320 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC123904.2-201ENST00000548059 300 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AL137849.1-201ENST00000604767 169 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC121334.2-201ENST00000605387 271 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC139792.2-201ENST00000624218 587 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AL159972.1-201ENST00000625150 448 ntBASIC3.58□□□□□ -1.84
COL28A1Q2UY09 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL28A1Q2UY09 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU6-600P-201ENST00000362524 99 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU6-432P-201ENST00000384196 109 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU6-297P-201ENST00000384636 107 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL031121.1-201ENST00000406553 254 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU2-71P-201ENST00000411395 189 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC017083.1-201ENST00000428093 483 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 KCTD9P3-201ENST00000434597 1169 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC099563.1-201ENST00000456086 418 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC108059.3-201ENST00000456388 214 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 VN1R17P-201ENST00000472048 1090 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RPS3AP50-201ENST00000487064 803 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC135721.1-201ENST00000497954 479 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC091435.1-201ENST00000505442 584 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 EXOC5P1-201ENST00000510543 1969 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RN7SKP244-201ENST00000516513 307 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU6-798P-201ENST00000516912 103 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 DEFB108D-201ENST00000527787 222 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 SNRPGP16-201ENST00000533275 226 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL133271.1-201ENST00000538229 291 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL133153.1-201ENST00000557756 303 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 MIR3682-201ENST00000581338 84 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 MIR3611-201ENST00000584484 83 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 SEPT7P9-203ENST00000604116 343 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AC007038.2-201ENST00000608095 740 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 AL603758.1-201ENST00000618654 241 ntBASIC3.57□□□□□ -1.84
COL28A1Q2UY09 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.57□□□□□ -1.84
COL28A1Q2UY09 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 DDX10P1-201ENST00000448545 1933 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC092104.1-201ENST00000497346 1441 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 RNU5E-8P-201ENST00000363502 116 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 RNU6-76P-201ENST00000384060 104 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL109755.1-201ENST00000401791 649 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 RNU2-37P-201ENST00000410695 177 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 TIMM9P1-201ENST00000436122 256 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL022238.1-201ENST00000442557 355 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MTND1P27-201ENST00000451117 902 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 MTND1P12-201ENST00000455231 147 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AL136097.1-201ENST00000456945 913 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 SNORD105B-201ENST00000458770 79 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 RPL21P104-201ENST00000464143 478 ntBASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.56□□□□□ -1.84
COL28A1Q2UY09 AC096576.1-201ENST00000489014 359 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms