Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC079597.1-201ENST00000624306 508 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 AL078596.1-201ENST00000624856 447 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.1□□□□□ -1.75
COL4A3Q01955 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.1□□□□□ -1.75
COL4A3Q01955 MTND4LP32-201ENST00000636111 270 ntBASIC4.1□□□□□ -1.75
COL4A3Q01955 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 AC006484.1-201ENST00000435086 1884 ntBASIC4.09□□□□□ -1.75
COL4A3Q01955 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.09□□□□□ -1.75
COL4A3Q01955 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC4.09□□□□□ -1.75
COL4A3Q01955 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
COL4A3Q01955 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
COL4A3Q01955 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL4A3Q01955 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A3Q01955 SNORA60-201ENST00000362396 134 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 RNU5E-8P-201ENST00000363502 116 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 RNA5SP72-201ENST00000364442 117 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 U1.1-201ENST00000384101 164 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 RNU6-463P-201ENST00000384340 107 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 RNU6-278P-201ENST00000390945 109 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC092832.1-201ENST00000422934 400 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC018630.2-202ENST00000422992 927 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A3Q01955 RPL7P52-201ENST00000449200 742 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A3Q01955 snoU13.8-201ENST00000458890 104 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 MTCO1P29-201ENST00000496868 288 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A3Q01955 FAM206BP-201ENST00000510179 541 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 Y_RNA.682-201ENST00000516457 100 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 Y_RNA.711-201ENST00000516993 102 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC008694.2-201ENST00000517591 306 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 SUMO2P20-201ENST00000520803 283 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.09□□□□□ -1.76
COL4A3Q01955 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A3Q01955 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A3Q01955 AL355836.1-201ENST00000555951 870 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC090615.1-201ENST00000577519 154 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC4.09□□□□□ -1.76
COL4A3Q01955 MIR4433B-201ENST00000581329 102 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC104984.5-201ENST00000586878 94 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 GLUD1P4-201ENST00000590914 418 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC006006.1-201ENST00000603082 144 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 RPL23AP92-201ENST00000603609 255 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AC091167.4-201ENST00000605079 184 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AL158196.1-201ENST00000616786 434 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 7SK.10-201ENST00000621414 298 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 AL159972.1-201ENST00000625150 448 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC4.09□□□□□ -1.76
COL4A3Q01955 A2MP1-204ENST00000566278 4130 ntBASIC4.09□□□□□ -1.76
COL4A3Q01955 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL4A3Q01955 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL121839.2-201ENST00000565058 6943 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 OR1S2-201ENST00000302592 978 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 MIR490-201ENST00000384865 128 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 U3.20-201ENST00000390909 217 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 RNU6-903P-201ENST00000391270 109 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL138799.3-201ENST00000438968 350 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A3Q01955 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A3Q01955 PRDX3P3-201ENST00000447765 522 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC006511.1-201ENST00000470614 315 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC126389.1-201ENST00000477436 290 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC110792.2-201ENST00000510278 224 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 RN7SKP219-201ENST00000516825 296 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC105224.1-201ENST00000587055 421 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AL137843.1-201ENST00000605078 385 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC124303.1-201ENST00000605703 360 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 AC019193.3-201ENST00000609144 554 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC011460.1-201ENST00000636268 1834 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC125336.1-201ENST00000508893 2827 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
COL4A3Q01955 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.08□□□□□ -1.76
COL4A3Q01955 AC006971.1-201ENST00000407916 4486 ntBASIC4.08□□□□□ -1.76
COL4A3Q01955 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms