Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC1.05□□□□□ -2.24
PRKDCP78527 AC116447.1-201ENST00000613153 453 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 U6.98-201ENST00000637157 84 ntBASIC1.05□□□□□ -2.24
PRKDCP78527 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
PRKDCP78527 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
PRKDCP78527 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
PRKDCP78527 RNU6-492P-201ENST00000363035 104 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
PRKDCP78527 HMGN2P35-201ENST00000412164 270 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 CYCSP33-201ENST00000414485 327 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC010265.1-201ENST00000513509 211 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 CBX3P8-201ENST00000532412 525 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 AL049779.4-201ENST00000604500 156 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.04□□□□□ -2.24
PRKDCP78527 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
PRKDCP78527 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.04□□□□□ -2.24
PRKDCP78527 MIR222-201ENST00000384992 110 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
PRKDCP78527 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
PRKDCP78527 TPT1P14-201ENST00000448018 505 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AP002345.1-201ENST00000456493 928 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 RPS29P20-201ENST00000489592 171 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 RN7SKP265-201ENST00000516448 223 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 SNORA31.24-201ENST00000517232 57 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC084757.1-201ENST00000559987 490 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC083806.3-201ENST00000614016 455 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC1.04□□□□□ -2.24
PRKDCP78527 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.04□□□□□ -2.24
PRKDCP78527 VTRNA1-3-201ENST00000365645 89 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC1.04□□□□□ -2.24
PRKDCP78527 RNU1-101P-201ENST00000391171 127 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC005912.1-201ENST00000495392 255 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.04□□□□□ -2.24
PRKDCP78527 MIR216A-201ENST00000385063 110 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 AL445305.1-201ENST00000432577 575 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 CASP3P1-201ENST00000446037 609 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 DYNLL1P5-201ENST00000467158 270 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC1.04□□□□□ -2.24
PRKDCP78527 TRAV28-201ENST00000557548 323 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 MIR4446-201ENST00000578505 67 ntBASIC1.04□□□□□ -2.24
PRKDCP78527 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.04□□□□□ -2.24
PRKDCP78527 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC1.03□□□□□ -2.24
PRKDCP78527 FNDC3CP-201ENST00000420795 1155 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 AC005534.2-201ENST00000431047 433 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 EZH2P1-201ENST00000431167 291 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.03□□□□□ -2.24
PRKDCP78527 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.03□□□□□ -2.24
PRKDCP78527 AC104307.1-201ENST00000616142 196 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 AL445493.3-201ENST00000619568 477 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.03□□□□□ -2.24
PRKDCP78527 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
PRKDCP78527 RNU6-461P-201ENST00000364195 107 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 RNU6-603P-201ENST00000411403 107 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC1.03□□□□□ -2.24
PRKDCP78527 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC1.03□□□□□ -2.24
PRKDCP78527 AC104986.1-201ENST00000517978 436 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.03□□□□□ -2.24
PRKDCP78527 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.03□□□□□ -2.24
PRKDCP78527 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC1.03□□□□□ -2.24
PRKDCP78527 AC016877.3-201ENST00000606778 504 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 AL449363.1-201ENST00000617815 186 ntBASIC1.03□□□□□ -2.24
PRKDCP78527 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.03□□□□□ -2.24
PRKDCP78527 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
PRKDCP78527 MIR193B-201ENST00000384907 83 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 CYCSP48-201ENST00000417124 323 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.03□□□□□ -2.25
PRKDCP78527 BLOC1S2P1-201ENST00000428431 301 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 DUXAP8-207ENST00000456786 622 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 AC098799.2-201ENST00000509466 868 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 RNU6-113P-201ENST00000516653 101 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
PRKDCP78527 KATNBL1P1-201ENST00000605192 748 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 AC004943.3-201ENST00000624116 600 ntBASIC1.03□□□□□ -2.25
PRKDCP78527 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
PRKDCP78527 RNA5SP363-201ENST00000365072 115 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.02□□□□□ -2.25
PRKDCP78527 AC073464.3-201ENST00000422564 712 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC1.02□□□□□ -2.25
PRKDCP78527 AP000873.1-201ENST00000463987 400 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 RNA5SP309-201ENST00000516670 106 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.02□□□□□ -2.25
PRKDCP78527 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 AC121758.2-201ENST00000553271 193 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC1.02□□□□□ -2.25
PRKDCP78527 AC092954.1-201ENST00000609121 445 ntBASIC1.02□□□□□ -2.25
PRKDCP78527 AC098657.3-201ENST00000620434 263 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms