Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 RNU6-1252P-201ENST00000363054 104 ntBASIC5.32□□□□□ -1.56
LIG1P18858 RNU5E-6P-201ENST00000365574 115 ntBASIC5.32□□□□□ -1.56
LIG1P18858 RNA5SP372-201ENST00000390836 115 ntBASIC5.32□□□□□ -1.56
LIG1P18858 EIF4E2P1-201ENST00000393781 255 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AL360182.1-201ENST00000397433 468 ntBASIC5.32□□□□□ -1.56
LIG1P18858 UBE2V1P2-201ENST00000397758 440 ntBASIC5.32□□□□□ -1.56
LIG1P18858 RNA5SP113-201ENST00000410486 84 ntBASIC5.32□□□□□ -1.56
LIG1P18858 RNU2-15P-201ENST00000410692 191 ntBASIC5.32□□□□□ -1.56
LIG1P18858 RPL37P18-201ENST00000411602 243 ntBASIC5.32□□□□□ -1.56
LIG1P18858 POLHP1-201ENST00000411806 470 ntBASIC5.32□□□□□ -1.56
LIG1P18858 ATG3P1-201ENST00000419507 911 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AC018865.2-201ENST00000423631 129 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 AC005019.1-201ENST00000436455 431 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 AC004801.2-202ENST00000463559 283 ntBASIC5.32□□□□□ -1.56
LIG1P18858 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
LIG1P18858 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG1P18858 RN7SKP276-201ENST00000516242 268 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG1P18858 AC092470.1-201ENST00000546187 132 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG1P18858 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.32□□□□□ -1.56
LIG1P18858 OR11H5P-201ENST00000554039 926 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.32□□□□□ -1.56
LIG1P18858 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC5.32□□□□□ -1.56
LIG1P18858 AL355598.1-201ENST00000604169 202 ntBASIC5.32□□□□□ -1.56
LIG1P18858 AC025034.2-201ENST00000623264 286 ntBASIC5.32□□□□□ -1.56
LIG1P18858 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 SAGE4P-201ENST00000442271 3381 ntBASIC5.32□□□□□ -1.56
LIG1P18858 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
LIG1P18858 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC5.32□□□□□ -1.56
LIG1P18858 AL133412.1-201ENST00000380194 2992 ntBASIC5.31□□□□□ -1.56
LIG1P18858 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
LIG1P18858 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG1P18858 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.31□□□□□ -1.56
LIG1P18858 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.31□□□□□ -1.56
LIG1P18858 Y_RNA.5-201ENST00000362334 102 ntBASIC5.31□□□□□ -1.56
LIG1P18858 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 RNU6-1032P-201ENST00000384100 107 ntBASIC5.31□□□□□ -1.56
LIG1P18858 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
LIG1P18858 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC5.31□□□□□ -1.56
LIG1P18858 RPL23AP48-201ENST00000406913 488 ntBASIC5.31□□□□□ -1.56
LIG1P18858 RNU2-36P-201ENST00000410361 191 ntBASIC5.31□□□□□ -1.56
LIG1P18858 RNU2-21P-201ENST00000410368 188 ntBASIC5.31□□□□□ -1.56
LIG1P18858 RN7SKP58-201ENST00000411010 305 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AC114482.1-201ENST00000418010 247 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 RPL23AP38-201ENST00000423801 469 ntBASIC5.31□□□□□ -1.56
LIG1P18858 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.31□□□□□ -1.56
LIG1P18858 H2AFZP5-201ENST00000446960 382 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AC022034.3-201ENST00000471393 478 ntBASIC5.31□□□□□ -1.56
LIG1P18858 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC5.31□□□□□ -1.56
LIG1P18858 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC5.31□□□□□ -1.56
LIG1P18858 FAM60DP-201ENST00000524174 632 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 MIR4270-201ENST00000581799 70 ntBASIC5.31□□□□□ -1.56
LIG1P18858 MIR4737-201ENST00000583979 81 ntBASIC5.31□□□□□ -1.56
LIG1P18858 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.31□□□□□ -1.56
LIG1P18858 AL442067.1-201ENST00000613261 223 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AL357559.1-201ENST00000622228 274 ntBASIC5.31□□□□□ -1.56
LIG1P18858 AC055839.1-201ENST00000634467 498 ntBASIC5.31□□□□□ -1.56
LIG1P18858 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 SDAD1P1-202ENST00000524156 2051 ntBASIC5.31□□□□□ -1.56
LIG1P18858 MAPK10-320ENST00000641462 6696 ntBASIC5.31□□□□□ -1.56
LIG1P18858 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIG1P18858 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.3□□□□□ -1.56
LIG1P18858 AC139713.2-215ENST00000641428 5037 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AL136164.3-201ENST00000624429 3978 ntBASIC5.3□□□□□ -1.56
LIG1P18858 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIG1P18858 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LIG1P18858 RNU6-61P-201ENST00000365528 109 ntBASIC5.3□□□□□ -1.56
LIG1P18858 SNORD116-11-201ENST00000383882 92 ntBASIC5.3□□□□□ -1.56
LIG1P18858 MT-TR-201ENST00000387439 65 ntBASIC5.3□□□□□ -1.56
LIG1P18858 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
LIG1P18858 MRPL42P3-201ENST00000401492 326 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AL049697.2-201ENST00000403708 294 ntBASIC5.3□□□□□ -1.56
LIG1P18858 Y_RNA.618-201ENST00000410949 107 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AC009237.10-201ENST00000414112 510 ntBASIC5.3□□□□□ -1.56
LIG1P18858 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.3□□□□□ -1.56
LIG1P18858 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC5.3□□□□□ -1.56
LIG1P18858 MTCYBP10-201ENST00000424905 650 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms