Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU6-263P-201ENST00000363811 107 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 SNORA7.2-201ENST00000364446 145 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 Y_RNA.315-201ENST00000365117 102 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RNU6-996P-201ENST00000365438 107 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RNU6-606P-201ENST00000384721 111 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 MIR1-2-201ENST00000384961 85 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AL590704.1-201ENST00000402856 794 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A1P12109 Z74021.1-201ENST00000423610 407 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RPS15AP9-201ENST00000439856 381 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A1P12109 CACYBPP2-201ENST00000453625 678 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RPL23AP81-201ENST00000455252 467 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 snoU13.8-201ENST00000458890 104 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RPL35AP15-201ENST00000468042 339 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC092451.1-201ENST00000480211 153 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A1P12109 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.73□□□□□ -1.65
COL6A1P12109 RNA5SP337-201ENST00000517007 109 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RNU6-1220P-201ENST00000517126 108 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A1P12109 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A1P12109 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.73□□□□□ -1.65
COL6A1P12109 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A1P12109 SETP2-201ENST00000553886 926 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A1P12109 AL669831.4-202ENST00000590817 238 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 SRGNP1-201ENST00000603392 451 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AL391813.2-201ENST00000609113 322 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC104237.2-201ENST00000612456 443 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.73□□□□□ -1.65
COL6A1P12109 AC079684.1-201ENST00000621405 437 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC091905.2-201ENST00000623143 306 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A1P12109 AC016588.2-201ENST00000632484 3021 ntBASIC4.73□□□□□ -1.65
COL6A1P12109 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A1P12109 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A1P12109 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.73□□□□□ -1.65
COL6A1P12109 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A1P12109 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
COL6A1P12109 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.73□□□□□ -1.65
COL6A1P12109 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL6A1P12109 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL6A1P12109 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC4.72□□□□□ -1.65
COL6A1P12109 AC126323.6-202ENST00000568092 3511 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 SNORA31-201ENST00000362607 130 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 Y_RNA.138-201ENST00000363462 102 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 RNU6-339P-201ENST00000384310 107 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 MIR607-201ENST00000385241 96 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 SNORD37.1-201ENST00000390968 65 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 SNORA74C-2-201ENST00000411179 201 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A1P12109 AC127526.1-201ENST00000417526 366 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 RPL36AP10-201ENST00000421785 322 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC4.72□□□□□ -1.65
COL6A1P12109 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 AC093156.1-201ENST00000440382 670 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AC006480.1-201ENST00000449887 378 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AL163973.1-201ENST00000484753 577 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC4.72□□□□□ -1.65
COL6A1P12109 RNA5SP446-201ENST00000515955 82 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 RNU6-1314P-201ENST00000517139 104 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.72□□□□□ -1.65
COL6A1P12109 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC4.72□□□□□ -1.65
COL6A1P12109 SUB1P1-201ENST00000524415 382 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AP004371.1-201ENST00000525240 214 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC4.72□□□□□ -1.65
COL6A1P12109 PSMA3P-201ENST00000555485 635 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 LINC02126-202ENST00000563754 750 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 AC090615.1-201ENST00000577519 154 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AL160281.1-201ENST00000605307 311 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AC084757.4-201ENST00000616350 526 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 MIR8069-1-201ENST00000616627 86 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 MIR7151-201ENST00000617477 60 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.72□□□□□ -1.65
COL6A1P12109 MIR8069-2-201ENST00000621412 86 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 AL354798.1-201ENST00000622505 329 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 MIR6500-201ENST00000622700 86 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 TEX41-265ENST00000627785 704 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A1P12109 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 MTND4P35-201ENST00000604257 1375 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 MTND5P33-201ENST00000571250 1450 ntBASIC4.72□□□□□ -1.65
COL6A1P12109 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A1P12109 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.72□□□□□ -1.65
COL6A1P12109 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL6A1P12109 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL6A1P12109 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A1P12109 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.71□□□□□ -1.66
COL6A1P12109 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC130650.2-201ENST00000618736 2403 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 RNA5SP307-201ENST00000362863 116 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 RNU6-97P-201ENST00000363387 104 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 RNU6-1207P-201ENST00000384343 107 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AL359643.1-201ENST00000404109 423 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 147.6 ms