Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RPL7AP6-201ENST00000477943 801 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RN7SL808P-201ENST00000496066 299 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC008716.1-201ENST00000511084 513 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RNU6-914P-201ENST00000516749 109 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RNU6-840P-201ENST00000517275 65 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC092490.3-201ENST00000545370 572 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC051619.2-201ENST00000559063 397 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC044860.2-201ENST00000561005 179 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 RN7SL652P-201ENST00000577769 300 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC022884.2-201ENST00000578535 580 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC007448.1-201ENST00000582714 234 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AC068870.2-201ENST00000620635 389 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 AP002799.1-201ENST00000623552 423 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 THAP12P5-201ENST00000405864 2275 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 ZNF299P-201ENST00000406845 1804 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 PRO1804-201ENST00000623780 2050 ntBASIC5.41□□□□□ -1.54
USP3Q9Y6I4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP3Q9Y6I4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 SNORD73A-201ENST00000386062 65 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 SNORA69.1-201ENST00000390904 137 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RNU6-700P-201ENST00000391043 107 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RN7SKP114-201ENST00000410327 279 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RNU6-325P-201ENST00000411132 105 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AL353621.1-201ENST00000418219 243 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 EIF4EP2-201ENST00000422816 654 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 NDUFB1P2-201ENST00000449477 176 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 OR2AQ1P-201ENST00000451972 200 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RN7SL329P-201ENST00000467740 299 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RPS15AP34-201ENST00000487776 387 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 RNU6-397P-201ENST00000516226 104 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 SNRPGP16-201ENST00000533275 226 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 CPDP1-201ENST00000579660 283 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AP000787.2-201ENST00000604432 568 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AC091903.1-201ENST00000624322 454 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC5.4□□□□□ -1.54
USP3Q9Y6I4 AC243829.7-201ENST00000633081 225 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC5.4□□□□□ -1.54
USP3Q9Y6I4 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
USP3Q9Y6I4 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.55
USP3Q9Y6I4 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
USP3Q9Y6I4 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
USP3Q9Y6I4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RNA5SP52-201ENST00000362448 134 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RNU4-44P-201ENST00000363050 141 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RNY1-201ENST00000364228 113 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 SNORA58B-201ENST00000364259 136 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.270-201ENST00000364693 104 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RNU6-746P-201ENST00000384112 109 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 HSPE1P8-201ENST00000406997 288 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 PSMD10P3-201ENST00000437000 448 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AC133134.1-201ENST00000466800 359 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MTND3P25-201ENST00000509243 135 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AC113155.1-201ENST00000511141 769 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RN7SKP66-201ENST00000516681 231 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 Y_RNA.713-201ENST00000517013 96 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 RPL23AP87-202ENST00000573039 466 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MIR5701-3-201ENST00000578890 82 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MIR5701-1-201ENST00000585138 82 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 MIR5701-2-201ENST00000615634 82 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 AL591926.8-201ENST00000616876 211 ntBASIC5.39□□□□□ -1.55
USP3Q9Y6I4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms