Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 HSPE1P7-201ENST00000604681 321 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AL355365.1-201ENST00000616480 294 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 AP003485.2-201ENST00000623636 610 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 AC097655.1-201ENST00000635075 318 ntBASIC3.56□□□□□ -1.84
VPS28Q9UK41 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
VPS28Q9UK41 PWAR6-201ENST00000552334 4618 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 FAM35BP-202ENST00000497389 3337 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 RNU1-75P-201ENST00000347264 129 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 RNA5SP72-201ENST00000364442 117 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AP002088.1-201ENST00000382740 395 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 SNORD17-201ENST00000390930 237 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL049545.1-201ENST00000401856 572 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL365203.2-201ENST00000423444 196 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL390023.1-201ENST00000428836 262 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL365184.2-201ENST00000431139 435 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 RNU6-1003P-201ENST00000517099 105 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC091489.2-201ENST00000566263 604 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 MIR3609-201ENST00000582661 80 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC103710.1-201ENST00000610003 901 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC122133.1-201ENST00000613964 233 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 OR5H6-203ENST00000642105 978 ntBASIC3.55□□□□□ -1.84
VPS28Q9UK41 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS28Q9UK41 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS28Q9UK41 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS28Q9UK41 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 RNU6-553P-201ENST00000364047 96 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 RNU5A-8P-201ENST00000364102 114 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 RNU1-101P-201ENST00000391171 127 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 RNA5SP31-201ENST00000411144 127 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 RN7SKP140-201ENST00000411196 284 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 RPL21P24-201ENST00000413752 448 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 HSFY4P-201ENST00000415994 1181 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 BX890604.2-201ENST00000427883 474 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL512286.1-201ENST00000439244 400 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL049734.2-201ENST00000441066 616 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 GDI2P2-201ENST00000445131 608 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 CBWD4P-201ENST00000445695 655 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 ZNF114P1-201ENST00000453500 292 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 RPL21P10-201ENST00000463521 490 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 NRON-201ENST00000517270 370 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC011611.1-201ENST00000552179 197 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL606834.2-201ENST00000602954 668 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC006557.5-201ENST00000603126 811 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 SRGNP1-201ENST00000603392 451 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL355472.4-201ENST00000610233 626 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 MIR7975-201ENST00000619350 68 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AL603755.1-201ENST00000619504 163 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AF246928.1-201ENST00000623768 87 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC120349.3-201ENST00000624377 529 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 AC093591.3-201ENST00000634516 308 ntBASIC3.54□□□□□ -1.84
VPS28Q9UK41 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS28Q9UK41 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS28Q9UK41 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms