Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
SENP3Q9H4L4 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC9.81□□□□□ -0.84
SENP3Q9H4L4 ITPR1-205ENST00000456211 9717 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
SENP3Q9H4L4 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
SENP3Q9H4L4 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
SENP3Q9H4L4 AP000766.1-201ENST00000561746 4140 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 NOTCH2-206ENST00000579475 2954 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 CD163-209ENST00000541972 3590 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AC000111.2-201ENST00000448200 210 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 RNU7-164P-201ENST00000459221 62 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 RN7SL552P-201ENST00000462094 276 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 RN7SL362P-201ENST00000494228 267 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AC087286.3-201ENST00000561409 953 ntTSL 3 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 MIR5006-201ENST00000583027 110 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AC020914.7-201ENST00000594477 545 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AL929325.1-201ENST00000603096 117 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AC073413.2-201ENST00000604332 360 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 FAP-203ENST00000443424 2598 ntTSL 2 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AGTPBP1-202ENST00000357081 4393 ntTSL 5 BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AC010886.1-201ENST00000437380 2869 ntBASIC9.8□□□□□ -0.84
SENP3Q9H4L4 ERC1-213ENST00000543086 9241 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 AP2B1-213ENST00000612116 3483 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
SENP3Q9H4L4 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AC023245.2-201ENST00000530760 2978 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 KRIT1-203ENST00000394505 3143 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 TTTY15-202ENST00000440408 5284 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 MIR937-201ENST00000401271 86 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AL121890.1-201ENST00000435457 205 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AC120036.3-201ENST00000517826 292 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AL590032.1-201ENST00000604920 252 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 SNORD98-201ENST00000636377 67 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 IL1RL1-203ENST00000404917 3571 ntTSL 2 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AC092692.1-201ENST00000623625 2595 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 PKP4-AS1-201ENST00000342892 4067 ntTSL 2 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 NTRK3-201ENST00000317501 3826 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 ZNF502-204ENST00000449836 3173 ntAPPRIS P1 TSL 3 BASIC9.79□□□□□ -0.84
SENP3Q9H4L4 AP005435.3-201ENST00000531260 3198 ntBASIC9.79□□□□□ -0.84
SENP3Q9H4L4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 MS4A7-202ENST00000358246 2871 ntTSL 3 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 SNORD116-10-201ENST00000363791 102 ntBASIC9.78□□□□□ -0.84
SENP3Q9H4L4 AC083806.1-201ENST00000468934 316 ntBASIC9.78□□□□□ -0.84
SENP3Q9H4L4 NDUFA4P2-201ENST00000489989 244 ntBASIC9.78□□□□□ -0.84
SENP3Q9H4L4 AC107918.3-201ENST00000533272 382 ntBASIC9.78□□□□□ -0.84
SENP3Q9H4L4 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 CD200R1-202ENST00000308611 2299 ntAPPRIS P4 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 KCNMA1-212ENST00000406533 5639 ntAPPRIS ALT2 TSL 5 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 HYDIN2-203ENST00000614586 13885 ntBASIC9.78□□□□□ -0.84
SENP3Q9H4L4 ST7-203ENST00000393443 2360 ntTSL 2 BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC9.78□□□□□ -0.84
SENP3Q9H4L4 AC058791.1-201ENST00000608412 3198 ntBASIC9.77□□□□□ -0.84
SENP3Q9H4L4 CDYL2-207ENST00000570137 8159 ntAPPRIS P2 TSL 1 (best) BASIC9.77□□□□□ -0.84
SENP3Q9H4L4 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC9.77□□□□□ -0.84
SENP3Q9H4L4 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC9.77□□□□□ -0.84
SENP3Q9H4L4 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 RNU1-75P-201ENST00000347264 129 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 Y_RNA.95-201ENST00000363079 95 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 RNU6-733P-201ENST00000410759 104 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 SNRPEP9-201ENST00000436794 238 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 RPL12P30-201ENST00000488389 499 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 RNU7-123P-201ENST00000515911 60 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 RNA5SP291-201ENST00000517222 105 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AP006245.2-201ENST00000522004 300 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AP005597.2-201ENST00000526238 341 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 SNRPCP6-201ENST00000528310 210 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AC124916.2-201ENST00000604416 224 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AP005432.2-201ENST00000608162 586 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AL136981.1-203ENST00000451452 3844 ntBASIC9.77□□□□□ -0.85
SENP3Q9H4L4 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC9.77□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms