Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL513043.1-201ENST00000439124 535 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 BNIP3P2-201ENST00000441221 577 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AL591503.2-201ENST00000442314 1005 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC009296.1-201ENST00000443146 155 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC097493.1-201ENST00000463958 372 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC025518.1-201ENST00000479856 347 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 RPL23AP70-201ENST00000483361 460 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 PRELID3BP6-201ENST00000503839 571 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 TPT1P8-201ENST00000510120 555 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC006499.2-201ENST00000513470 337 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 RNU6-714P-201ENST00000516963 103 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MIR3616-201ENST00000584070 92 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC024560.3-201ENST00000608482 349 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AL121652.1-201ENST00000608851 448 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AC009268.2-201ENST00000621925 457 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 AP001002.2-201ENST00000625137 386 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 CCT4P2-201ENST00000233836 1548 ntBASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
ZNF540Q8NDQ6 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RNU5E-8P-201ENST00000363502 116 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RNU4-51P-201ENST00000364206 140 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 SNORA72.3-201ENST00000365074 132 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 SET-203ENST00000372688 801 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RNU6-217P-201ENST00000384164 104 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL356057.2-201ENST00000403318 432 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 HMGB1P49-201ENST00000418882 569 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 MTCO2P23-201ENST00000425216 680 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 ZNF863P-201ENST00000426746 417 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC005326.1-201ENST00000429197 123 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RPS15AP7-201ENST00000439294 405 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 COX6CP2-201ENST00000444980 225 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 DDX3P2-201ENST00000446138 111 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 MTCO2P25-201ENST00000447065 681 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 GAPDHP27-201ENST00000447427 1020 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 WASF1P1-201ENST00000447560 1131 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 BX510359.1-201ENST00000456973 237 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RPS20P22-201ENST00000473700 357 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 GTF2IP9-201ENST00000502460 301 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AIG1P1-201ENST00000503376 148 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 UBE2V1P12-201ENST00000503954 474 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC114786.4-201ENST00000508771 728 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC114797.1-201ENST00000514003 728 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 RN7SKP57-201ENST00000517248 293 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC022634.1-201ENST00000520765 532 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 COX6CP5-201ENST00000527162 228 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC034105.3-201ENST00000565294 442 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL353997.4-201ENST00000586196 166 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL606834.3-201ENST00000602615 496 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC245517.5-201ENST00000611529 162 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC022960.3-201ENST00000619794 441 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC231657.1-201ENST00000624313 397 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 MIR3651-201ENST00000630427 90 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC084035.1-201ENST00000634543 607 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC099654.9-201ENST00000637055 678 ntBASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.91□□□□□ -1.94
ZNF540Q8NDQ6 AL390862.1-201ENST00000635467 1469 ntBASIC2.9□□□□□ -1.94
ZNF540Q8NDQ6 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.9□□□□□ -1.94
ZNF540Q8NDQ6 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 NACA3P-201ENST00000359690 648 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 RNU5E-10P-201ENST00000363506 118 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 SNORA68.1-201ENST00000364537 132 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 MIR634-201ENST00000385208 97 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 SNORD17-201ENST00000390930 237 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AL512633.1-201ENST00000399931 655 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AL513475.1-201ENST00000406602 315 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 Z92545.1-201ENST00000411782 234 ntBASIC2.9□□□□□ -1.95
ZNF540Q8NDQ6 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.9□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms