Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AC129850.1-201ENST00000436203 508 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 SNRPEP7-201ENST00000438350 220 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 ZNF886P-201ENST00000450781 723 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL109741.2-201ENST00000455561 343 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL603758.1-201ENST00000618654 241 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AC110079.1-202ENST00000635213 138 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL136360.1-201ENST00000503377 1900 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 RNU5E-8P-201ENST00000363502 116 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 SNORA54-201ENST00000384281 123 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 Y_RNA.465-201ENST00000384293 102 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 RNU6-1035P-201ENST00000384477 107 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 MIR620-201ENST00000385232 95 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC110754.1-201ENST00000399740 601 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 RPL7P25-201ENST00000404151 721 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AL953862.1-201ENST00000423016 168 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 HMGN2P30-201ENST00000423237 256 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 OOSP1P1-201ENST00000423265 274 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC012498.1-201ENST00000424037 437 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 ATP5F1P1-201ENST00000433775 569 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 ISCA1P2-201ENST00000438679 421 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC125238.1-201ENST00000448842 249 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 MEMO1P3-201ENST00000459811 302 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC021382.1-201ENST00000483523 359 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC092185.1-201ENST00000491371 97 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC079395.1-201ENST00000510981 262 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC104027.1-201ENST00000521887 300 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC090680.2-201ENST00000550279 742 ntTSL 3 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC009712.1-201ENST00000564938 316 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AMZ2P1-203ENST00000565833 850 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AL353997.4-201ENST00000586196 166 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC245297.2-201ENST00000610119 565 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC004852.3-201ENST00000614131 326 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC068880.5-201ENST00000624331 290 ntBASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.09□□□□□ -1.91
HDDC3Q8N4P3 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.09□□□□□ -1.92
HDDC3Q8N4P3 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 RNA5SP383-201ENST00000362934 120 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 SNORD21-201ENST00000383953 95 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 RNA5SP354-201ENST00000391247 136 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 ERHP2-201ENST00000402323 299 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 RNA5SP293-201ENST00000410527 113 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 TPMTP3-201ENST00000411928 735 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC245291.1-201ENST00000419501 328 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 ERMN-209ENST00000420719 1246 ntTSL 2 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC104332.2-201ENST00000429959 156 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 MTND1P31-201ENST00000449206 961 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 MTATP6P14-201ENST00000455189 673 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 snoU109.3-201ENST00000459477 145 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC005410.1-202ENST00000460347 485 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC108729.1-201ENST00000487812 947 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC024589.1-201ENST00000512207 263 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC091826.1-201ENST00000514065 313 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 RNA5SP367-201ENST00000516557 118 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 RNU6-1282P-201ENST00000516735 96 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 HMGN1P28-201ENST00000521340 364 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AP002748.2-201ENST00000528671 348 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AP001269.3-201ENST00000588718 329 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC068313.1-201ENST00000604028 1008 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AL591516.1-201ENST00000611326 274 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AL359757.2-201ENST00000624309 274 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AL049641.1-201ENST00000441055 1948 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 AC007785.2-201ENST00000598627 1916 ntBASIC3.08□□□□□ -1.92
HDDC3Q8N4P3 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms