Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
SKA3Q8IX90 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
SKA3Q8IX90 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
SKA3Q8IX90 RNU6-97P-201ENST00000363387 104 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 RNU6-1207P-201ENST00000384343 107 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL136372.1-201ENST00000403060 228 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL356421.1-201ENST00000403255 413 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 RPL7P25-201ENST00000404151 721 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 RNU4-65P-201ENST00000410473 140 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 CCDC58P2-201ENST00000417131 366 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL022400.1-201ENST00000423946 935 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC109583.1-201ENST00000432156 268 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 MTCYBP34-201ENST00000439552 670 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC234775.1-201ENST00000454247 670 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 RPL30P9-201ENST00000465586 330 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC104563.1-201ENST00000476147 376 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 RPS27AP9-201ENST00000477681 438 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC006445.1-201ENST00000491925 405 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 CBX3P3-201ENST00000508108 532 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 RNU6-826P-201ENST00000516827 104 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL391156.1-201ENST00000554965 554 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 COX6CP3-201ENST00000580869 223 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AP001029.3-201ENST00000588063 596 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC006539.2-201ENST00000601729 572 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC093424.1-201ENST00000604999 338 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 VIS1.1-201ENST00000610517 203 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL110115.1-201ENST00000614396 364 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC002550.2-201ENST00000621246 394 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC007490.1-201ENST00000624321 703 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.69□□□□□ -1.98
SKA3Q8IX90 AC073346.2-201ENST00000624724 2058 ntBASIC2.69□□□□□ -1.98
SKA3Q8IX90 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 MTCO1P9-201ENST00000505577 1534 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
SKA3Q8IX90 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
SKA3Q8IX90 RPL21P132-201ENST00000331267 462 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 RNU6-462P-201ENST00000362659 105 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 RNA5SP374-201ENST00000362939 125 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 RNU6ATAC10P-201ENST00000408635 111 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AL512649.1-201ENST00000428997 581 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC024082.2-201ENST00000434771 238 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 LEKR1-206ENST00000483177 546 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 RN7SL20P-201ENST00000488827 297 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC112673.1-201ENST00000513168 575 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC008885.1-201ENST00000514930 301 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 RN7SKP43-201ENST00000516173 320 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 RN7SKP287-201ENST00000516546 266 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 UBTFL10-201ENST00000528532 562 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 MIR5195-201ENST00000583555 115 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC023043.3-201ENST00000593113 385 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC013444.2-201ENST00000603317 787 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC011451.2-201ENST00000604303 598 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC008962.1-201ENST00000605729 304 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AL442067.2-201ENST00000614033 363 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 MIR8057-201ENST00000620957 69 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC008993.2-201ENST00000631744 806 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC2.68□□□□□ -1.98
SKA3Q8IX90 AC009812.4-201ENST00000569134 1805 ntBASIC2.68□□□□□ -1.98
SKA3Q8IX90 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.67□□□□□ -1.98
SKA3Q8IX90 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms