Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RNU6-637P-201ENST00000384050 107 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 SYF2P2-201ENST00000417620 583 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 OR4K11P-201ENST00000431829 904 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 ISCA1P2-201ENST00000438679 421 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 MTATP6P26-201ENST00000445926 662 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC073387.1-201ENST00000453261 709 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC023598.1-201ENST00000472521 361 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 RPL31P60-201ENST00000478450 367 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC026403.1-201ENST00000518938 295 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AP006245.1-201ENST00000522549 120 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AP000867.2-201ENST00000532468 320 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 TPMTP1-201ENST00000592307 737 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AF131215.7-201ENST00000602443 707 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC012360.2-201ENST00000609349 391 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AL450472.3-201ENST00000615578 367 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC093591.3-201ENST00000634516 308 ntBASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
NUP54Q7Z3B4 AC007823.1-201ENST00000569932 1566 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 ZNF833P-201ENST00000424938 1494 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 SNORA73.2-201ENST00000364946 201 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RNU6-76P-201ENST00000384060 104 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RN7SKP27-201ENST00000410684 333 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RPL30P2-201ENST00000414021 291 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 CYCSP4-201ENST00000429682 331 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC090774.1-201ENST00000435925 246 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 HSPD1P21-201ENST00000436541 245 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RPL26P6-201ENST00000440913 438 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 GDI2P2-201ENST00000445131 608 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RPS29P31-201ENST00000446147 164 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RPS29P12-201ENST00000460178 152 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC034236.1-201ENST00000469891 373 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC109464.2-201ENST00000510242 943 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC116347.2-201ENST00000514912 523 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RNU2-27P-201ENST00000516185 142 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RNU6-1003P-201ENST00000517099 105 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 OR5G4P-201ENST00000525251 760 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 RPL23AP78-201ENST00000599928 470 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 DUXAP4-201ENST00000603046 613 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC244472.2-201ENST00000617639 406 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 AC092125.1-201ENST00000562568 1995 ntBASIC3.29□□□□□ -1.88
NUP54Q7Z3B4 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 GABRG2-229ENST00000641017 3628 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 MT-TH-201ENST00000387441 69 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RNU6-754P-201ENST00000391166 107 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 SNORA48.7-201ENST00000391302 135 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AL353705.1-201ENST00000433468 480 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC009237.8-201ENST00000445492 379 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 Z83846.1-201ENST00000446798 265 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 EPS15P1-201ENST00000448836 336 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RPS27AP8-201ENST00000452665 445 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 MTCO1P42-201ENST00000457379 726 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RNU6-420P-201ENST00000458780 107 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RPL23AP14-201ENST00000468281 468 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RN7SL594P-201ENST00000470590 287 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 HSPE1P6-201ENST00000479457 291 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 RPL21P129-201ENST00000491732 478 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 GMPSP1-201ENST00000514075 579 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC011602.1-201ENST00000546484 331 ntBASIC3.28□□□□□ -1.88
NUP54Q7Z3B4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms