Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.4□□□□□ -1.7
USP39Q53GS9 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP39Q53GS9 AC105074.1-201ENST00000623380 3095 ntBASIC4.4□□□□□ -1.7
USP39Q53GS9 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.4□□□□□ -1.7
USP39Q53GS9 HSP90AA5P-201ENST00000438353 2192 ntBASIC4.4□□□□□ -1.7
USP39Q53GS9 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.4□□□□□ -1.7
USP39Q53GS9 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP39Q53GS9 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
USP39Q53GS9 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.4□□□□□ -1.7
USP39Q53GS9 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.4□□□□□ -1.7
USP39Q53GS9 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 MIR372-201ENST00000362225 67 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-853P-201ENST00000364306 107 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNY4P16-201ENST00000364768 94 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 Y_RNA.301-201ENST00000364990 103 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-444P-201ENST00000383988 108 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-606P-201ENST00000384721 111 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 EIF5P1-201ENST00000400019 1231 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL031679.1-201ENST00000400616 525 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL592114.1-201ENST00000403842 483 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL031736.2-201ENST00000426573 787 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC006548.1-201ENST00000427470 102 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RPS6P12-201ENST00000432491 726 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 ERLEC1P1-201ENST00000433806 578 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC119618.1-201ENST00000434191 222 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AL356276.2-201ENST00000435919 558 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 DDX3P2-201ENST00000446138 111 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-1208P-201ENST00000459588 107 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC079804.1-201ENST00000461922 436 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC010301.1-201ENST00000473936 355 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC104563.1-201ENST00000476147 376 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC012181.1-201ENST00000479895 423 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-123P-201ENST00000516163 102 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 Y_RNA.665-201ENST00000516177 98 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 SNORA67.7-201ENST00000516664 135 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNA5SP337-201ENST00000517007 109 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNU6-1137P-201ENST00000517073 99 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 Y_RNA.720-201ENST00000517166 92 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 COX6CP5-201ENST00000527162 228 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.4□□□□□ -1.71
USP39Q53GS9 AC098848.2-201ENST00000588023 330 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC115085.1-201ENST00000588924 229 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC4.4□□□□□ -1.71
USP39Q53GS9 DPPA3P3-201ENST00000603842 430 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC010680.4-201ENST00000605334 543 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AC006133.1-201ENST00000617106 264 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 CR381572.1-201ENST00000625098 102 ntBASIC4.4□□□□□ -1.71
USP39Q53GS9 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.4□□□□□ -1.71
USP39Q53GS9 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.4□□□□□ -1.71
USP39Q53GS9 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
USP39Q53GS9 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP39Q53GS9 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
USP39Q53GS9 MTND5P33-201ENST00000571250 1450 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 Y_RNA.339-201ENST00000365325 102 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RNU6-1318P-201ENST00000365389 103 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP39Q53GS9 RNU6-921P-201ENST00000384361 107 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RNY4P36-201ENST00000391116 96 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RPL7P60-201ENST00000397636 735 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AL359634.1-202ENST00000404721 284 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RN7SKP58-201ENST00000411010 305 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RN7SKP167-201ENST00000411047 285 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 PRELID3BP11-201ENST00000414230 479 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC108032.1-201ENST00000416706 207 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC092832.1-201ENST00000422934 400 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.39□□□□□ -1.71
USP39Q53GS9 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 MTCO3P2-201ENST00000457365 171 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 GMFBP1-201ENST00000467831 427 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 VN1R17P-201ENST00000472048 1090 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RPL30P11-201ENST00000495304 339 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RPS27AP13-201ENST00000498403 237 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 HSPD1P15-201ENST00000505573 1122 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 FAM206BP-201ENST00000510179 541 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 RNA5SP49-201ENST00000516450 115 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AC090151.1-201ENST00000520784 730 ntBASIC4.39□□□□□ -1.71
USP39Q53GS9 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.39□□□□□ -1.71
USP39Q53GS9 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms