Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 BEND7P1-201ENST00000422058 457 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC079780.1-201ENST00000428259 207 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 USP9YP29-201ENST00000445112 563 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC115115.1-201ENST00000449927 248 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AP001086.1-201ENST00000494882 321 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 RPL7P47-201ENST00000497299 556 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 RNU2-58P-201ENST00000516403 183 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 RNU6-1003P-201ENST00000517099 105 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 OR5D17P-201ENST00000531492 978 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC024909.2-201ENST00000553035 286 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 ZNF519P3-201ENST00000557158 1032 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 SNORD84-203ENST00000584275 78 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 MIR4276-201ENST00000584832 70 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC040904.1-201ENST00000590850 223 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC007687.1-201ENST00000602704 304 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AL606834.2-201ENST00000602954 668 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC112191.3-201ENST00000604371 277 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC064872.1-201ENST00000604823 1072 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AL158211.4-201ENST00000606988 584 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC3.65□□□□□ -1.83
USP41Q3LFD5 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AL356274.2-201ENST00000624379 3752 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC011460.1-201ENST00000636268 1834 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 USP8P1-201ENST00000494673 3183 ntBASIC3.65□□□□□ -1.83
USP41Q3LFD5 AC004925.1-201ENST00000624256 2706 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 MIR135A2-201ENST00000384854 100 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 RNU6-328P-201ENST00000390887 106 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 SSXP9-201ENST00000417503 292 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 MORF4L1P6-201ENST00000418771 268 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC099677.1-201ENST00000420575 175 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC006028.1-201ENST00000438379 402 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 MTCO2P7-201ENST00000446518 666 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC084357.1-201ENST00000473404 255 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 RPL21P13-201ENST00000488305 481 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC103783.1-201ENST00000520506 373 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AP000907.2-201ENST00000530827 353 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC012182.1-201ENST00000570133 895 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 MIR5680-201ENST00000577577 84 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC011471.1-201ENST00000585766 187 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC012493.2-201ENST00000595083 291 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC006254.3-201ENST00000603353 884 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC087752.4-201ENST00000605911 462 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC011939.3-201ENST00000613686 466 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC010678.1-201ENST00000614118 713 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC112204.3-201ENST00000623822 332 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC139792.2-201ENST00000624218 587 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.64□□□□□ -1.83
USP41Q3LFD5 MTND5P33-201ENST00000571250 1450 ntBASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP41Q3LFD5 AC009902.3-201ENST00000606235 2172 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP41Q3LFD5 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 RNU4-24P-201ENST00000364565 139 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 SNORA51.2-201ENST00000364595 132 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 RNU6-1181P-201ENST00000384191 106 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 SNORA48.2-201ENST00000390926 124 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 Y_RNA.598-201ENST00000410480 95 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 CCDC58P2-201ENST00000417131 366 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC3.63□□□□□ -1.83
USP41Q3LFD5 AL353706.1-201ENST00000436728 494 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 AC006539.3-201ENST00000454258 129 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 RPL23AP62-201ENST00000463396 453 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 AC093278.1-201ENST00000494700 600 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 HMGB1P22-201ENST00000505315 124 ntBASIC3.63□□□□□ -1.83
USP41Q3LFD5 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.63□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms