Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 DDX43P2-201ENST00000604753 1354 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 U6.98-201ENST00000637157 84 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 DDX10P1-201ENST00000448545 1933 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 AC011477.1-204ENST00000623416 1325 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 SNORA62.2-201ENST00000364672 152 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 ARF4P2-201ENST00000430209 526 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 RPPH1-2P-201ENST00000516688 293 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 VTA1P2-201ENST00000520205 911 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 AC068446.3-201ENST00000555285 382 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 AC123786.2-201ENST00000603459 275 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 RPL26P37-201ENST00000411983 438 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 RPS3AP44-201ENST00000425466 790 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 AC087190.1-201ENST00000484462 480 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 NPM1P52-201ENST00000518264 846 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.35□□□□□ -2.19
CHD9Q3L8U1 RN7SL793P-201ENST00000583259 296 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 AC009318.3-201ENST00000616916 503 ntBASIC1.35□□□□□ -2.19
CHD9Q3L8U1 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AC011155.1-201ENST00000316512 456 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 SNORA51.12-201ENST00000384448 134 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AC092638.1-201ENST00000411966 1275 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD9Q3L8U1 BMI1P1-201ENST00000445879 941 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AL031659.1-201ENST00000447075 539 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AC098799.2-201ENST00000509466 868 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD9Q3L8U1 LDHBP3-201ENST00000514909 822 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 RPL23AP78-201ENST00000599928 470 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 AC243773.3-201ENST00000613270 256 ntBASIC1.34□□□□□ -2.19
CHD9Q3L8U1 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC1.34□□□□□ -2.19
CHD9Q3L8U1 RNU6-178P-201ENST00000384631 104 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AC092832.1-201ENST00000422934 400 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AL078601.1-201ENST00000444542 271 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 TPRKBP1-201ENST00000456243 481 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 NDUFB4P9-201ENST00000511646 388 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AC087854.1-201ENST00000519706 414 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 MTND5P21-201ENST00000531961 522 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 MTND2P17-201ENST00000550281 688 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC1.34□□□□□ -2.2
CHD9Q3L8U1 SNORD39.2-201ENST00000579995 76 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC1.34□□□□□ -2.2
CHD9Q3L8U1 NUP58P1-201ENST00000502546 1738 ntBASIC1.34□□□□□ -2.2
CHD9Q3L8U1 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.2
CHD9Q3L8U1 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.34□□□□□ -2.2
CHD9Q3L8U1 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AC021087.2-201ENST00000504656 1203 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 MIR4512-201ENST00000583257 77 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AC000123.2-201ENST00000623124 461 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 PABPC1P9-201ENST00000426076 1612 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 MIR124-3-201ENST00000384866 87 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AL357078.2-201ENST00000416486 427 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 HSPE1P3-201ENST00000559254 309 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 MIR1273G-201ENST00000577677 100 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AL136164.4-201ENST00000625013 2135 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC1.33□□□□□ -2.2
CHD9Q3L8U1 HMGB3P21-201ENST00000452483 547 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AL109741.2-201ENST00000455561 343 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AL449363.1-201ENST00000617815 186 ntBASIC1.33□□□□□ -2.2
CHD9Q3L8U1 AP000560.1-201ENST00000624150 1937 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 RNU2-37P-201ENST00000410695 177 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AL022400.1-201ENST00000423946 935 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 NAP1L4P3-201ENST00000432820 1147 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AC008427.1-201ENST00000503102 655 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 Y_RNA.675-201ENST00000516389 149 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 MTND4P1-201ENST00000457501 1466 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 RNU4-41P-201ENST00000364426 143 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 SUMO2P12-201ENST00000405924 140 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 STAT4-203ENST00000409995 709 ntTSL 5 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 SETP8-201ENST00000435341 628 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 HSPE1P22-201ENST00000456856 327 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.32□□□□□ -2.2
CHD9Q3L8U1 Y_RNA.681-201ENST00000516445 113 ntBASIC1.32□□□□□ -2.2
CHD9Q3L8U1 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms