Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SMURF2P1-201ENST00000514992 481 ntBASIC5.06□□□□□ -1.6
LIG3P49916 SNORA14.1-201ENST00000516113 141 ntBASIC5.06□□□□□ -1.6
LIG3P49916 RNU6-988P-201ENST00000519081 107 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC5.06□□□□□ -1.6
LIG3P49916 RPL21P7-201ENST00000557463 483 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 XIAPP1-201ENST00000603162 600 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AC020910.3-201ENST00000603701 874 ntBASIC5.06□□□□□ -1.6
LIG3P49916 SDR42E1P2-201ENST00000614861 481 ntBASIC5.06□□□□□ -1.6
LIG3P49916 AL355365.1-201ENST00000616480 294 ntBASIC5.06□□□□□ -1.6
LIG3P49916 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
LIG3P49916 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 MTND5P19-201ENST00000424872 1794 ntBASIC5.06□□□□□ -1.6
LIG3P49916 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC5.06□□□□□ -1.6
LIG3P49916 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIG3P49916 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.05□□□□□ -1.6
LIG3P49916 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIG3P49916 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 ZBTB8OSP1-201ENST00000342688 498 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RNU6-562P-201ENST00000362731 107 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RNU6-128P-201ENST00000383976 107 ntBASIC5.05□□□□□ -1.6
LIG3P49916 SNORA51.8-201ENST00000384234 132 ntBASIC5.05□□□□□ -1.6
LIG3P49916 Y_RNA.459-201ENST00000384251 102 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RNA5SP372-201ENST00000390836 115 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RPL7AP73-201ENST00000413490 353 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 AC009963.2-201ENST00000453431 138 ntBASIC5.05□□□□□ -1.6
LIG3P49916 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
LIG3P49916 OARD1-209ENST00000471367 401 ntTSL 2 BASIC5.05□□□□□ -1.6
LIG3P49916 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LIG3P49916 RNU2-69P-201ENST00000516061 100 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RN7SKP60-201ENST00000516985 239 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.05□□□□□ -1.6
LIG3P49916 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.05□□□□□ -1.6
LIG3P49916 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC5.05□□□□□ -1.6
LIG3P49916 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 APAF1-207ENST00000547743 651 ntTSL 3 BASIC5.05□□□□□ -1.6
LIG3P49916 DYNLL1P4-201ENST00000549314 266 ntBASIC5.05□□□□□ -1.6
LIG3P49916 MIR3671-201ENST00000580455 88 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC011487.3-201ENST00000593607 453 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AL158196.1-201ENST00000616786 434 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC010378.1-201ENST00000619270 362 ntBASIC5.05□□□□□ -1.6
LIG3P49916 RMST_9.1-201ENST00000619945 193 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC098657.3-201ENST00000620434 263 ntBASIC5.05□□□□□ -1.6
LIG3P49916 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.05□□□□□ -1.6
LIG3P49916 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
LIG3P49916 AL139811.1-201ENST00000424779 2299 ntBASIC5.05□□□□□ -1.6
LIG3P49916 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 Y_RNA.31-201ENST00000362574 102 ntBASIC5.04□□□□□ -1.6
LIG3P49916 RN7SKP95-201ENST00000362860 303 ntBASIC5.04□□□□□ -1.6
LIG3P49916 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.04□□□□□ -1.6
LIG3P49916 Y_RNA.144-201ENST00000363521 113 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AL391417.1-201ENST00000404100 426 ntBASIC5.04□□□□□ -1.6
LIG3P49916 SNORA77-201ENST00000408716 125 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AL160275.2-201ENST00000412010 394 ntBASIC5.04□□□□□ -1.6
LIG3P49916 ATG3P1-201ENST00000419507 911 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 PMCHL1-202ENST00000423102 261 ntBASIC5.04□□□□□ -1.6
LIG3P49916 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC5.04□□□□□ -1.6
LIG3P49916 RPL23AP69-201ENST00000431134 458 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC5.04□□□□□ -1.6
LIG3P49916 RNU6-953P-201ENST00000459154 107 ntBASIC5.04□□□□□ -1.6
LIG3P49916 RN7SL517P-201ENST00000462240 305 ntBASIC5.04□□□□□ -1.6
LIG3P49916 RN7SL319P-201ENST00000480656 221 ntBASIC5.04□□□□□ -1.6
LIG3P49916 RPL7P42-201ENST00000481005 679 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC012158.1-204ENST00000483430 465 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC140172.1-201ENST00000502928 141 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.04□□□□□ -1.6
LIG3P49916 AC002456.2-201ENST00000509356 380 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.04□□□□□ -1.6
LIG3P49916 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 RNU6-1069P-201ENST00000516612 133 ntBASIC5.04□□□□□ -1.6
LIG3P49916 SMILR-201ENST00000533992 553 ntTSL 4 BASIC5.04□□□□□ -1.6
LIG3P49916 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.04□□□□□ -1.6
LIG3P49916 MTCO3P23-201ENST00000561363 289 ntBASIC5.04□□□□□ -1.6
LIG3P49916 MIR5692C1-201ENST00000585309 91 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AL031320.1-201ENST00000604177 357 ntBASIC5.04□□□□□ -1.6
LIG3P49916 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 FAM157A-202ENST00000615155 405 ntBASIC5.04□□□□□ -1.6
LIG3P49916 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 AC093535.2-201ENST00000624769 2326 ntBASIC5.04□□□□□ -1.6
LIG3P49916 MAPK10-304ENST00000641341 3984 ntBASIC5.04□□□□□ -1.6
LIG3P49916 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.04□□□□□ -1.6
LIG3P49916 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
LIG3P49916 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
LIG3P49916 AC139769.1-204ENST00000472297 1931 ntBASIC5.03□□□□□ -1.6
LIG3P49916 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms