Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC107214.2-201ENST00000608204 634 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AC004908.3-201ENST00000610248 625 ntBASIC3.94□□□□□ -1.78
CTCFP49711 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.94□□□□□ -1.78
CTCFP49711 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.94□□□□□ -1.78
CTCFP49711 AL732618.1-201ENST00000623251 301 ntBASIC3.94□□□□□ -1.78
CTCFP49711 AL356266.1-201ENST00000623311 483 ntBASIC3.94□□□□□ -1.78
CTCFP49711 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 AL672296.1-201ENST00000427780 2158 ntBASIC3.94□□□□□ -1.78
CTCFP49711 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.94□□□□□ -1.78
CTCFP49711 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CTCFP49711 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.94□□□□□ -1.78
CTCFP49711 AL445523.1-201ENST00000451184 1362 ntBASIC3.93□□□□□ -1.78
CTCFP49711 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CTCFP49711 AL161781.1-201ENST00000354277 403 ntBASIC3.93□□□□□ -1.78
CTCFP49711 FRG1CP-201ENST00000358464 769 ntBASIC3.93□□□□□ -1.78
CTCFP49711 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CTCFP49711 RNU2-47P-201ENST00000410649 186 ntBASIC3.93□□□□□ -1.78
CTCFP49711 RNA5SP184-201ENST00000411071 108 ntBASIC3.93□□□□□ -1.78
CTCFP49711 HMGB1P11-201ENST00000413899 637 ntBASIC3.93□□□□□ -1.78
CTCFP49711 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC3.93□□□□□ -1.78
CTCFP49711 RPL21P109-201ENST00000422213 475 ntBASIC3.93□□□□□ -1.78
CTCFP49711 LARP1BP3-201ENST00000437229 869 ntBASIC3.93□□□□□ -1.78
CTCFP49711 AP000542.1-201ENST00000448473 371 ntBASIC3.93□□□□□ -1.78
CTCFP49711 HMGN2P16-201ENST00000456802 261 ntBASIC3.93□□□□□ -1.78
CTCFP49711 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.93□□□□□ -1.78
CTCFP49711 RPL23AP55-201ENST00000498163 452 ntBASIC3.93□□□□□ -1.78
CTCFP49711 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.93□□□□□ -1.78
CTCFP49711 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CTCFP49711 POU5F1P7-201ENST00000508759 541 ntBASIC3.93□□□□□ -1.78
CTCFP49711 MTCO2P32-201ENST00000514865 403 ntBASIC3.93□□□□□ -1.78
CTCFP49711 MTND5P4-201ENST00000514978 288 ntBASIC3.93□□□□□ -1.78
CTCFP49711 RNU6-1073P-201ENST00000517182 106 ntBASIC3.93□□□□□ -1.78
CTCFP49711 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.93□□□□□ -1.78
CTCFP49711 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.93□□□□□ -1.78
CTCFP49711 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.93□□□□□ -1.78
CTCFP49711 AC068587.4-201ENST00000533893 186 ntBASIC3.93□□□□□ -1.78
CTCFP49711 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.93□□□□□ -1.78
CTCFP49711 AC023161.2-201ENST00000551218 780 ntBASIC3.93□□□□□ -1.78
CTCFP49711 MIR544B-201ENST00000582372 78 ntBASIC3.93□□□□□ -1.78
CTCFP49711 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.93□□□□□ -1.78
CTCFP49711 MTCYBP22-201ENST00000603788 447 ntBASIC3.93□□□□□ -1.78
CTCFP49711 DUXAP11-201ENST00000603858 526 ntBASIC3.93□□□□□ -1.78
CTCFP49711 BCRP9-201ENST00000605312 388 ntBASIC3.93□□□□□ -1.78
CTCFP49711 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.93□□□□□ -1.78
CTCFP49711 RNVU1-4-201ENST00000612985 164 ntBASIC3.93□□□□□ -1.78
CTCFP49711 MIR7844-201ENST00000616161 122 ntBASIC3.93□□□□□ -1.78
CTCFP49711 AL356585.4-201ENST00000623078 1229 ntBASIC3.93□□□□□ -1.78
CTCFP49711 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.93□□□□□ -1.78
CTCFP49711 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CTCFP49711 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.93□□□□□ -1.78
CTCFP49711 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CTCFP49711 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
CTCFP49711 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CTCFP49711 NFIB-202ENST00000380924 840 ntTSL 5 BASIC3.92□□□□□ -1.78
CTCFP49711 MIR184-201ENST00000384962 84 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.92□□□□□ -1.78
CTCFP49711 AC063979.1-201ENST00000415539 377 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC090960.1-201ENST00000421072 306 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AL390023.1-201ENST00000428836 262 ntBASIC3.92□□□□□ -1.78
CTCFP49711 RPL23AP69-201ENST00000431134 458 ntBASIC3.92□□□□□ -1.78
CTCFP49711 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.92□□□□□ -1.78
CTCFP49711 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.92□□□□□ -1.78
CTCFP49711 AL662791.1-201ENST00000441992 928 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.92□□□□□ -1.78
CTCFP49711 ZNF114P1-201ENST00000453500 292 ntBASIC3.92□□□□□ -1.78
CTCFP49711 snoU13.8-201ENST00000458890 104 ntBASIC3.92□□□□□ -1.78
CTCFP49711 RNU6-1095P-201ENST00000516148 108 ntBASIC3.92□□□□□ -1.78
CTCFP49711 Y_RNA.688-201ENST00000516565 95 ntBASIC3.92□□□□□ -1.78
CTCFP49711 RNA5SP468-201ENST00000516782 93 ntBASIC3.92□□□□□ -1.78
CTCFP49711 SNORA31.20-201ENST00000517111 133 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.92□□□□□ -1.78
CTCFP49711 AP004247.1-201ENST00000531556 1289 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC013828.2-201ENST00000532487 235 ntBASIC3.92□□□□□ -1.78
CTCFP49711 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.92□□□□□ -1.78
CTCFP49711 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.92□□□□□ -1.78
CTCFP49711 AC087481.2-201ENST00000565492 330 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.92□□□□□ -1.78
CTCFP49711 AC006254.3-201ENST00000603353 884 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.92□□□□□ -1.78
CTCFP49711 AC103710.4-201ENST00000609301 899 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC007494.3-201ENST00000624660 743 ntBASIC3.92□□□□□ -1.78
CTCFP49711 AC006927.3-201ENST00000638789 384 ntBASIC3.92□□□□□ -1.78
CTCFP49711 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.92□□□□□ -1.78
CTCFP49711 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.92□□□□□ -1.78
CTCFP49711 THUMPD3P1-201ENST00000506556 1480 ntBASIC3.92□□□□□ -1.78
CTCFP49711 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
CTCFP49711 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.91□□□□□ -1.78
CTCFP49711 AL356274.2-201ENST00000624379 3752 ntBASIC3.91□□□□□ -1.78
CTCFP49711 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 CR383658.2-201ENST00000547576 1525 ntBASIC3.91□□□□□ -1.78
CTCFP49711 AC092447.10-201ENST00000620607 1652 ntBASIC3.91□□□□□ -1.78
CTCFP49711 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
CTCFP49711 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CTCFP49711 RNA5SP295-201ENST00000362655 121 ntBASIC3.91□□□□□ -1.78
CTCFP49711 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
CTCFP49711 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
CTCFP49711 RPS4XP8-201ENST00000402039 771 ntBASIC3.91□□□□□ -1.78
CTCFP49711 MIR1305-201ENST00000408300 86 ntBASIC3.91□□□□□ -1.78
CTCFP49711 TPMTP3-201ENST00000411928 735 ntBASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms