Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 AC007919.1-201ENST00000429380 217 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AL512844.2-201ENST00000433990 593 ntBASIC3.02□□□□□ -1.93
CDX1P47902 BX679664.1-201ENST00000434429 253 ntBASIC3.02□□□□□ -1.93
CDX1P47902 CBWD4P-201ENST00000445695 655 ntBASIC3.02□□□□□ -1.93
CDX1P47902 USP9YP12-201ENST00000450481 570 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC116337.2-201ENST00000477662 156 ntBASIC3.02□□□□□ -1.93
CDX1P47902 RPL32P34-201ENST00000486380 400 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC109486.1-201ENST00000486833 374 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 SAP18P1-201ENST00000512058 390 ntBASIC3.02□□□□□ -1.93
CDX1P47902 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 RN7SKP209-201ENST00000516888 304 ntBASIC3.02□□□□□ -1.93
CDX1P47902 RNA5SP291-201ENST00000517222 105 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC022616.6-201ENST00000520479 119 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC087369.1-201ENST00000520775 996 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CDX1P47902 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC007115.1-201ENST00000546853 234 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC3.02□□□□□ -1.93
CDX1P47902 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.02□□□□□ -1.93
CDX1P47902 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.02□□□□□ -1.93
CDX1P47902 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 MIR3609-201ENST00000582661 80 ntBASIC3.02□□□□□ -1.93
CDX1P47902 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 AL606834.2-201ENST00000602954 668 ntBASIC3.02□□□□□ -1.93
CDX1P47902 Z99497.2-201ENST00000603634 310 ntBASIC3.02□□□□□ -1.93
CDX1P47902 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 AC005344.1-201ENST00000613391 459 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 Z99129.2-201ENST00000619967 314 ntBASIC3.02□□□□□ -1.93
CDX1P47902 FP236240.3-201ENST00000623061 327 ntBASIC3.02□□□□□ -1.93
CDX1P47902 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 OR5H6-203ENST00000642105 978 ntBASIC3.02□□□□□ -1.93
CDX1P47902 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.02□□□□□ -1.93
CDX1P47902 AP004289.2-201ENST00000444413 1457 ntBASIC3.02□□□□□ -1.93
CDX1P47902 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.01□□□□□ -1.93
CDX1P47902 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 RNU6-283P-201ENST00000364788 107 ntBASIC3.01□□□□□ -1.93
CDX1P47902 RNY3P13-201ENST00000365542 102 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 MIR199A2-201ENST00000385289 110 ntBASIC3.01□□□□□ -1.93
CDX1P47902 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.01□□□□□ -1.93
CDX1P47902 SNORA48.8-201ENST00000391324 134 ntBASIC3.01□□□□□ -1.93
CDX1P47902 SNORA11-201ENST00000408789 128 ntBASIC3.01□□□□□ -1.93
CDX1P47902 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 RN7SKP156-201ENST00000410308 342 ntBASIC3.01□□□□□ -1.93
CDX1P47902 RNU2-62P-201ENST00000410868 191 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.01□□□□□ -1.93
CDX1P47902 AL451054.2-201ENST00000420896 202 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC012498.1-201ENST00000424037 437 ntBASIC3.01□□□□□ -1.93
CDX1P47902 BX890604.2-201ENST00000427883 474 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.01□□□□□ -1.93
CDX1P47902 AC005094.1-201ENST00000440420 368 ntBASIC3.01□□□□□ -1.93
CDX1P47902 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.01□□□□□ -1.93
CDX1P47902 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC3.01□□□□□ -1.93
CDX1P47902 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.01□□□□□ -1.93
CDX1P47902 SNORD59.2-201ENST00000516873 68 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC068657.1-201ENST00000520807 306 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.01□□□□□ -1.93
CDX1P47902 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.01□□□□□ -1.93
CDX1P47902 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.01□□□□□ -1.93
CDX1P47902 ACTR3BP3-201ENST00000565577 979 ntBASIC3.01□□□□□ -1.93
CDX1P47902 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC008507.1-201ENST00000587506 734 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.01□□□□□ -1.93
CDX1P47902 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.01□□□□□ -1.93
CDX1P47902 AC121247.2-201ENST00000604776 136 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AL391813.2-201ENST00000609113 322 ntBASIC3.01□□□□□ -1.93
CDX1P47902 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.01□□□□□ -1.93
CDX1P47902 AL138880.2-201ENST00000616214 239 ntBASIC3.01□□□□□ -1.93
CDX1P47902 AC068057.2-201ENST00000624047 895 ntBASIC3.01□□□□□ -1.93
CDX1P47902 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 AC007785.2-201ENST00000598627 1916 ntBASIC3.01□□□□□ -1.93
CDX1P47902 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
CDX1P47902 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.01□□□□□ -1.93
CDX1P47902 AL079305.1-201ENST00000623159 3008 ntBASIC3.01□□□□□ -1.93
CDX1P47902 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
CDX1P47902 MTND4P4-201ENST00000439033 1366 ntBASIC3□□□□□ -1.93
CDX1P47902 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3□□□□□ -1.93
CDX1P47902 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3□□□□□ -1.93
CDX1P47902 CGA-201ENST00000369582 729 ntTSL 5 BASIC3□□□□□ -1.93
CDX1P47902 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3□□□□□ -1.93
CDX1P47902 SNORD115.1-201ENST00000391109 76 ntBASIC3□□□□□ -1.93
CDX1P47902 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
CDX1P47902 AL136116.1-201ENST00000403591 381 ntBASIC3□□□□□ -1.93
CDX1P47902 Y_RNA.608-201ENST00000410647 95 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms