Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.35□□□□□ -2.03
CUX1P39880 CALM1P2-201ENST00000452941 448 ntBASIC2.35□□□□□ -2.03
CUX1P39880 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC2.35□□□□□ -2.03
CUX1P39880 HSPE1P20-201ENST00000538133 289 ntBASIC2.35□□□□□ -2.03
CUX1P39880 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC2.35□□□□□ -2.03
CUX1P39880 OR4G11P-202ENST00000642116 1414 ntBASIC2.35□□□□□ -2.03
CUX1P39880 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.35□□□□□ -2.03
CUX1P39880 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.35□□□□□ -2.03
CUX1P39880 AC090740.1-201ENST00000623193 2262 ntBASIC2.34□□□□□ -2.03
CUX1P39880 CASP3P1-201ENST00000446037 609 ntBASIC2.34□□□□□ -2.03
CUX1P39880 SNORD121B-201ENST00000458838 81 ntBASIC2.34□□□□□ -2.03
CUX1P39880 MIR4474-201ENST00000579189 78 ntBASIC2.34□□□□□ -2.03
CUX1P39880 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC2.34□□□□□ -2.03
CUX1P39880 AC067838.1-201ENST00000606064 577 ntBASIC2.34□□□□□ -2.03
CUX1P39880 uc_338.20-201ENST00000621563 178 ntBASIC2.34□□□□□ -2.03
CUX1P39880 AC025048.6-202ENST00000627667 438 ntBASIC2.34□□□□□ -2.03
CUX1P39880 RNU1-101P-201ENST00000391171 127 ntBASIC2.33□□□□□ -2.04
CUX1P39880 MIR1304-201ENST00000408243 91 ntBASIC2.33□□□□□ -2.04
CUX1P39880 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC2.33□□□□□ -2.04
CUX1P39880 AL357078.2-201ENST00000416486 427 ntBASIC2.33□□□□□ -2.04
CUX1P39880 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC2.33□□□□□ -2.04
CUX1P39880 COX6CP12-201ENST00000446748 202 ntBASIC2.33□□□□□ -2.04
CUX1P39880 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.33□□□□□ -2.04
CUX1P39880 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.33□□□□□ -2.04
CUX1P39880 ACTR3BP3-201ENST00000565577 979 ntBASIC2.33□□□□□ -2.04
CUX1P39880 AL589935.2-201ENST00000616471 1231 ntBASIC2.33□□□□□ -2.04
CUX1P39880 AC011477.1-204ENST00000623416 1325 ntBASIC2.33□□□□□ -2.04
CUX1P39880 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.32□□□□□ -2.04
CUX1P39880 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.32□□□□□ -2.04
CUX1P39880 AC090096.1-201ENST00000489168 390 ntBASIC2.32□□□□□ -2.04
CUX1P39880 HAUS1P1-201ENST00000505275 832 ntBASIC2.32□□□□□ -2.04
CUX1P39880 RNU6-1223P-201ENST00000517124 104 ntBASIC2.32□□□□□ -2.04
CUX1P39880 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AC084364.2-201ENST00000546924 395 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AL137100.2-201ENST00000555786 315 ntBASIC2.32□□□□□ -2.04
CUX1P39880 SNORD39.2-201ENST00000579995 76 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AC010200.2-201ENST00000605098 235 ntBASIC2.32□□□□□ -2.04
CUX1P39880 STMN1P1-201ENST00000617809 440 ntBASIC2.32□□□□□ -2.04
CUX1P39880 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CUX1P39880 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.32□□□□□ -2.04
CUX1P39880 TPMTP3-201ENST00000411928 735 ntBASIC2.32□□□□□ -2.04
CUX1P39880 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC2.32□□□□□ -2.04
CUX1P39880 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC2.32□□□□□ -2.04
CUX1P39880 AC090515.1-201ENST00000465295 476 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AC034222.1-201ENST00000494052 532 ntBASIC2.32□□□□□ -2.04
CUX1P39880 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC2.32□□□□□ -2.04
CUX1P39880 AL161713.1-201ENST00000555538 145 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AC023813.2-201ENST00000564321 469 ntBASIC2.32□□□□□ -2.04
CUX1P39880 BNIP3P4-201ENST00000604946 565 ntBASIC2.32□□□□□ -2.04
CUX1P39880 AC006023.2-201ENST00000609916 167 ntBASIC2.32□□□□□ -2.04
CUX1P39880 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
CUX1P39880 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
CUX1P39880 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
CUX1P39880 DDX10P1-201ENST00000448545 1933 ntBASIC2.31□□□□□ -2.04
CUX1P39880 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.31□□□□□ -2.04
CUX1P39880 HMGN2P38-201ENST00000423806 265 ntBASIC2.31□□□□□ -2.04
CUX1P39880 AC021146.8-201ENST00000507455 733 ntBASIC2.31□□□□□ -2.04
CUX1P39880 AC006390.1-201ENST00000508068 283 ntBASIC2.31□□□□□ -2.04
CUX1P39880 C1GALT1P2-201ENST00000510813 1104 ntBASIC2.31□□□□□ -2.04
CUX1P39880 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC2.31□□□□□ -2.04
CUX1P39880 AP001804.3-201ENST00000525146 880 ntBASIC2.31□□□□□ -2.04
CUX1P39880 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.31□□□□□ -2.04
CUX1P39880 MIR4285-201ENST00000581001 85 ntBASIC2.31□□□□□ -2.04
CUX1P39880 MIR151B-201ENST00000584249 96 ntBASIC2.31□□□□□ -2.04
CUX1P39880 CR382285.2-201ENST00000624662 1495 ntBASIC2.31□□□□□ -2.04
CUX1P39880 MTCO1P4-201ENST00000520516 1409 ntBASIC2.3□□□□□ -2.04
CUX1P39880 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CUX1P39880 RNA5SP393-201ENST00000363423 117 ntBASIC2.3□□□□□ -2.04
CUX1P39880 RNU4-51P-201ENST00000364206 140 ntBASIC2.3□□□□□ -2.04
CUX1P39880 RNU1-109P-201ENST00000383960 147 ntBASIC2.3□□□□□ -2.04
CUX1P39880 MIR144-201ENST00000384886 86 ntBASIC2.3□□□□□ -2.04
CUX1P39880 ERHP2-201ENST00000402323 299 ntBASIC2.3□□□□□ -2.04
CUX1P39880 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.3□□□□□ -2.04
CUX1P39880 AC009965.2-201ENST00000425328 970 ntBASIC2.3□□□□□ -2.04
CUX1P39880 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC2.3□□□□□ -2.04
CUX1P39880 XKRYP6-201ENST00000440468 1116 ntBASIC2.3□□□□□ -2.04
CUX1P39880 OR10R1P-201ENST00000441524 1141 ntBASIC2.3□□□□□ -2.04
CUX1P39880 XKRYP3-201ENST00000442113 1116 ntBASIC2.3□□□□□ -2.04
CUX1P39880 snoU109.4-201ENST00000458953 143 ntBASIC2.3□□□□□ -2.04
CUX1P39880 IGHVIII-38-1-201ENST00000521454 282 ntBASIC2.3□□□□□ -2.04
CUX1P39880 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.3□□□□□ -2.04
CUX1P39880 MTCO3P24-201ENST00000572729 782 ntBASIC2.3□□□□□ -2.04
CUX1P39880 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.3□□□□□ -2.04
CUX1P39880 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
CUX1P39880 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
CUX1P39880 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.29□□□□□ -2.04
CUX1P39880 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.29□□□□□ -2.04
CUX1P39880 SRIP3-201ENST00000413200 219 ntBASIC2.29□□□□□ -2.04
CUX1P39880 MTND3P6-201ENST00000485242 339 ntBASIC2.29□□□□□ -2.04
CUX1P39880 RN7SKP49-201ENST00000516675 260 ntBASIC2.29□□□□□ -2.04
CUX1P39880 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.29□□□□□ -2.04
CUX1P39880 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC2.28□□□□□ -2.04
CUX1P39880 SNORA31-201ENST00000362607 130 ntBASIC2.28□□□□□ -2.04
CUX1P39880 SNORA40.6-201ENST00000391153 128 ntBASIC2.28□□□□□ -2.04
CUX1P39880 AL023807.1-201ENST00000407932 359 ntBASIC2.28□□□□□ -2.04
CUX1P39880 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.28□□□□□ -2.04
CUX1P39880 RPL37P25-201ENST00000507308 276 ntBASIC2.28□□□□□ -2.04
CUX1P39880 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.28□□□□□ -2.04
CUX1P39880 AP005435.4-201ENST00000529514 284 ntBASIC2.28□□□□□ -2.04
CUX1P39880 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms