Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RN7SKP219-201ENST00000516825 296 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC023632.4-201ENST00000517783 191 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC008489.1-201ENST00000524271 483 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AP003730.1-201ENST00000524605 285 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 AP005435.4-201ENST00000529514 284 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC018638.8-201ENST00000588755 281 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC011712.1-201ENST00000588959 234 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC006254.3-201ENST00000603353 884 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AL034351.1-201ENST00000605288 668 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AL353621.2-201ENST00000605340 133 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC005086.4-201ENST00000623065 213 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AC090617.10-201ENST00000624308 134 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 AL359697.1-201ENST00000624879 587 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 AC140479.6-201ENST00000633535 357 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 ATM-230ENST00000640388 578 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 EOGT-210ENST00000615922 1931 ntBASIC3.36□□□□□ -1.87
HOXD3P31249 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.36□□□□□ -1.87
HOXD3P31249 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
HOXD3P31249 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 NOL8P1-201ENST00000508336 3529 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
HOXD3P31249 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 OR4G1P-203ENST00000641984 1631 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC007685.1-201ENST00000329806 452 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC067945.1-201ENST00000342609 618 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RNU6-1155P-201ENST00000363554 107 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RNU4-20P-201ENST00000365601 151 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 Y_RNA.529-201ENST00000384586 119 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 AL109755.1-201ENST00000401791 649 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AL162578.1-201ENST00000406202 378 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 SNORA11F-201ENST00000408237 128 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 SNORA74C-2-201ENST00000411179 201 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD3P31249 RPL23AP52-201ENST00000439311 478 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 HMGN2P21-201ENST00000447764 270 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD3P31249 MTND3P16-201ENST00000452205 344 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AL121877.1-201ENST00000453704 622 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RPL36AP13-201ENST00000457490 317 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AL162395.1-201ENST00000457882 422 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RNU7-182P-201ENST00000459009 62 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 GMFBP1-201ENST00000467831 427 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC010631.1-201ENST00000474150 156 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC078817.1-201ENST00000492623 435 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC020593.1-201ENST00000507399 299 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 VWA8P1-201ENST00000510889 176 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD3P31249 SNORD60.2-201ENST00000516883 86 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC103783.1-201ENST00000520506 373 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC006270.2-201ENST00000578523 652 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC024619.4-201ENST00000580924 316 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD3P31249 BNIP3P22-201ENST00000593399 556 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 IGHV3-29-201ENST00000604817 344 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC010201.1-201ENST00000605051 540 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 SNORD91B-202ENST00000608459 222 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 TUG1_2.1-201ENST00000614234 87 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC140113.4-201ENST00000622087 222 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 RNA5SP196-201ENST00000625967 102 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC055839.1-201ENST00000634467 498 ntBASIC3.35□□□□□ -1.87
HOXD3P31249 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.35□□□□□ -1.87
HOXD3P31249 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
HOXD3P31249 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
HOXD3P31249 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.35□□□□□ -1.87
HOXD3P31249 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
HOXD3P31249 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD3P31249 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
HOXD3P31249 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.34□□□□□ -1.87
HOXD3P31249 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HOXD3P31249 AL158163.1-201ENST00000603915 1649 ntBASIC3.34□□□□□ -1.87
HOXD3P31249 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms