Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 HMGN2P19-201ENST00000425149 265 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC004022.1-201ENST00000447766 1066 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 Y_RNA.700-201ENST00000516806 100 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC022790.1-201ENST00000522872 204 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 AP000907.2-201ENST00000530827 353 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC023825.1-201ENST00000566704 1030 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC068135.2-201ENST00000569293 1028 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 MIR5000-201ENST00000577717 103 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 MIR4448-201ENST00000584360 86 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC016877.3-201ENST00000606778 504 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC138649.5-201ENST00000637456 137 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 RPL23AP29-201ENST00000397284 453 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 HMGB1P45-201ENST00000435986 653 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 RPL39P40-201ENST00000445481 146 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 RSL24D1P2-201ENST00000445584 366 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AL157827.1-201ENST00000447622 132 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 MTCO1P48-201ENST00000448024 1096 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC1.22□□□□□ -2.21
COL6A5A8TX70 MIR3618-201ENST00000580330 88 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AL158032.1-201ENST00000605401 106 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC005156.1-201ENST00000613371 573 ntBASIC1.22□□□□□ -2.21
COL6A5A8TX70 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.22□□□□□ -2.21
COL6A5A8TX70 AC006026.1-201ENST00000444025 1803 ntBASIC1.21□□□□□ -2.21
COL6A5A8TX70 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 U3.37-201ENST00000408528 213 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 RPS12P24-201ENST00000412619 387 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 BX510359.4-201ENST00000423750 193 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 MIR409-201ENST00000362237 79 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 Y_RNA.258-201ENST00000364613 105 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 RN7SKP101-201ENST00000411376 320 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 AC093084.1-201ENST00000424233 687 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 RPL23AP78-201ENST00000599928 470 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 MIR924-201ENST00000638017 53 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 AC100821.1-201ENST00000523153 2479 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 AL118496.1-201ENST00000440201 1812 ntBASIC1.21□□□□□ -2.22
COL6A5A8TX70 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.21□□□□□ -2.22
COL6A5A8TX70 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL6A5A8TX70 RNA5SP160-201ENST00000364866 120 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 RNY4P3-201ENST00000365254 95 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 Y_RNA.488-201ENST00000384403 102 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 DHFRP5-201ENST00000406944 564 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 MIR1265-201ENST00000408444 86 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 AL353718.1-201ENST00000451028 517 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
COL6A5A8TX70 FABP5P6-201ENST00000510588 409 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 LRRC34P2-201ENST00000514850 553 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 BX322635.1-201ENST00000605804 496 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AL592494.3-201ENST00000609485 464 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 MIR6078-201ENST00000611069 100 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AC000123.2-201ENST00000623124 461 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 Y_RNA.142-201ENST00000363491 102 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC1.2□□□□□ -2.22
COL6A5A8TX70 SSXP10-201ENST00000402595 565 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 HMGN2P18-201ENST00000450680 270 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AC234775.1-201ENST00000454247 670 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 AC092989.1-201ENST00000481235 277 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 GTF2IP9-201ENST00000502460 301 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
COL6A5A8TX70 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 AL137847.3-201ENST00000611521 109 ntBASIC1.2□□□□□ -2.22
COL6A5A8TX70 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
COL6A5A8TX70 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC1.2□□□□□ -2.22
COL6A5A8TX70 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 RNA5SP295-201ENST00000362655 121 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 VTRNA1-1-201ENST00000363120 99 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 HSPE1P26-201ENST00000405341 275 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 HMGN2P35-201ENST00000412164 270 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 HMGN1P14-201ENST00000412459 517 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 AL590664.1-201ENST00000448065 339 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 USP9YP10-201ENST00000454868 628 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 SNRPFP3-201ENST00000457792 225 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 AC008885.2-201ENST00000509506 930 ntBASIC1.19□□□□□ -2.22
COL6A5A8TX70 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.19□□□□□ -2.22
COL6A5A8TX70 AC084364.2-201ENST00000546924 395 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms