Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNORA62.3-201ENST00000365110 153 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 RNU2-43P-201ENST00000410306 190 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 OR9R1P-201ENST00000412200 877 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 RPL21P24-201ENST00000413752 448 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 OR51A5P-201ENST00000415429 942 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC099677.1-201ENST00000420575 175 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL162389.1-201ENST00000449233 177 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC006512.1-201ENST00000468816 291 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 MTCYBP18-201ENST00000501056 747 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC026427.2-201ENST00000506228 536 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC018710.1-201ENST00000506509 158 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 STMN1P2-201ENST00000508435 439 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 PCBP2P3-201ENST00000509726 843 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 RNA5SP401-201ENST00000515920 127 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AP001646.1-201ENST00000527936 915 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC018630.1-201ENST00000541376 925 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC063950.1-201ENST00000552036 308 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL121603.1-201ENST00000553815 142 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC120057.2-201ENST00000571520 271 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC012417.1-201ENST00000582307 1039 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC025253.1-201ENST00000613623 543 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL450472.3-201ENST00000615578 367 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC006133.1-201ENST00000617106 264 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AL353748.2-201ENST00000622148 471 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AP003122.6-201ENST00000623831 495 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AP005264.7-201ENST00000625003 745 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
TDP1Q9NUW8 PNPT1P2-201ENST00000456768 2050 ntBASIC4.25□□□□□ -1.73
TDP1Q9NUW8 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC006020.1-201ENST00000420179 1854 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 PKIB-201ENST00000258014 1595 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC016588.2-201ENST00000632484 3021 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 Y_RNA.70-201ENST00000362886 110 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 Y_RNA.160-201ENST00000363677 92 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RNU5E-6P-201ENST00000365574 115 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RNU6-641P-201ENST00000384006 107 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 MIR454-201ENST00000390180 115 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL356776.1-201ENST00000406574 447 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RNU2-39P-201ENST00000410604 198 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RNU6-1068P-201ENST00000410958 103 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 F10-AS1-201ENST00000424635 417 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC007389.2-201ENST00000434630 306 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 SNORD108-201ENST00000459332 71 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC078785.3-201ENST00000476607 425 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC126389.1-201ENST00000477436 290 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC021146.3-201ENST00000511911 260 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC025465.4-201ENST00000513422 638 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC100870.1-201ENST00000522035 505 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 OR5BN1P-201ENST00000532955 829 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 RPL21P7-201ENST00000557463 483 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 HSPE1P5-201ENST00000561489 272 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 MIR5685-201ENST00000579080 79 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 MIR5684-201ENST00000585074 65 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC005255.1-201ENST00000593748 216 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC010680.3-201ENST00000604215 520 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 LARP7P1-201ENST00000605576 316 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.24□□□□□ -1.73
TDP1Q9NUW8 AC093648.1-201ENST00000623546 606 ntBASIC4.24□□□□□ -1.73
TDP1Q9NUW8 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 262 ms