Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
DDX28Q9NUL7 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC008568.2-201ENST00000623862 2313 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 RNA5SP88-201ENST00000365560 109 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 CD24P4-201ENST00000382840 243 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 RNU6-637P-201ENST00000384050 107 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 RNU6-114P-201ENST00000384704 105 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 MTND4P13-201ENST00000402078 1023 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 MIR1305-201ENST00000408300 86 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 PPP1R11P2-201ENST00000423543 382 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC073063.1-201ENST00000434352 607 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC091862.1-201ENST00000438016 1100 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AL354941.1-201ENST00000438600 464 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AP000542.1-201ENST00000448473 371 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 SCARNA13-201ENST00000516672 275 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 EEF1A1P37-201ENST00000522748 715 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 OR5B10P-201ENST00000532869 642 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC067852.3-201ENST00000589177 561 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC006539.2-201ENST00000601729 572 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC021171.1-201ENST00000603137 706 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC004067.1-201ENST00000608733 700 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC021755.4-201ENST00000616620 456 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 MIR7975-201ENST00000619350 68 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC009268.2-201ENST00000621925 457 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC008443.7-201ENST00000622195 246 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 AC244258.1-201ENST00000637553 1071 ntBASIC3.03□□□□□ -1.92
DDX28Q9NUL7 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
DDX28Q9NUL7 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
DDX28Q9NUL7 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.03□□□□□ -1.93
DDX28Q9NUL7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 MTND5P19-201ENST00000424872 1794 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RNU6-433P-201ENST00000363216 104 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RNU5E-8P-201ENST00000363502 116 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 U8.9-201ENST00000365667 134 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RNU6-1200P-201ENST00000384162 107 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 U3.20-201ENST00000390909 217 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 FAT1P1-201ENST00000406588 507 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RNA5SP344-201ENST00000411081 104 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RPL32P35-201ENST00000415214 394 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 BX842559.1-201ENST00000419615 532 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RPL21P23-201ENST00000446654 460 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AL359385.1-201ENST00000456509 365 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RN7SL75P-201ENST00000461926 281 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 HSPE1P6-201ENST00000479457 291 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC106872.3-201ENST00000495104 446 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC118282.1-201ENST00000506408 765 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC022447.3-201ENST00000506865 495 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 HSPE1P23-201ENST00000509838 286 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 RN7SKP287-201ENST00000516546 266 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC023538.1-201ENST00000534576 736 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 OR7K1P-201ENST00000546439 926 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 DUXAP4-201ENST00000603046 613 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC093424.1-201ENST00000604999 338 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC097468.3-201ENST00000607956 456 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 MIR6076-201ENST00000617521 113 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AP003122.6-201ENST00000623831 495 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC079597.1-201ENST00000624306 508 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AL159972.1-201ENST00000625150 448 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 PCMTD1P7-201ENST00000634506 357 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC084035.1-201ENST00000634543 607 ntBASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.02□□□□□ -1.93
DDX28Q9NUL7 AL353743.1-202ENST00000431724 1695 ntBASIC3.01□□□□□ -1.93
DDX28Q9NUL7 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.01□□□□□ -1.93
DDX28Q9NUL7 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms