Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.44□□□□□ -1.7
NUP88Q99567 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 RNU6-223P-201ENST00000362830 107 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 SNORA7.2-201ENST00000364446 145 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 MIR199A2-201ENST00000385289 110 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 RNU6-754P-201ENST00000391166 107 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 RNA5SP107-201ENST00000411358 122 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC4.44□□□□□ -1.7
NUP88Q99567 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
NUP88Q99567 YME1L1P1-201ENST00000429435 297 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC073464.1-201ENST00000429823 534 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 C8orf59P1-201ENST00000429930 303 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.44□□□□□ -1.7
NUP88Q99567 MTCO2P29-201ENST00000465212 189 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC007182.2-201ENST00000489251 402 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC068305.1-201ENST00000497406 726 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC114967.1-201ENST00000504890 259 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC091133.4-201ENST00000511142 308 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 RNA5SP208-201ENST00000516156 78 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 IGKV2D-23-201ENST00000518179 286 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC026403.1-201ENST00000518938 295 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.44□□□□□ -1.7
NUP88Q99567 AL360157.1-201ENST00000565962 87 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.44□□□□□ -1.7
NUP88Q99567 AF038458.1-201ENST00000588406 262 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AL049634.3-201ENST00000604968 457 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 SNORA51-201ENST00000606420 132 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC004067.1-201ENST00000608733 700 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC007684.1-201ENST00000609671 477 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC136475.10-201ENST00000620253 385 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 MIR6863-201ENST00000636112 90 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 AC009093.8-201ENST00000641769 292 ntBASIC4.44□□□□□ -1.7
NUP88Q99567 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
NUP88Q99567 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.44□□□□□ -1.7
NUP88Q99567 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
NUP88Q99567 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
NUP88Q99567 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
NUP88Q99567 RNU5E-8P-201ENST00000363502 116 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 MIR449B-201ENST00000384995 97 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RNU4-55P-201ENST00000410731 137 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RPL21P24-201ENST00000413752 448 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 AC068533.1-201ENST00000418542 415 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL035423.1-201ENST00000420331 213 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 RPL21P66-201ENST00000426566 466 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC4.43□□□□□ -1.7
NUP88Q99567 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.43□□□□□ -1.7
NUP88Q99567 MTND1P4-201ENST00000435196 415 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.43□□□□□ -1.7
NUP88Q99567 AC078817.1-201ENST00000492623 435 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AC078918.1-201ENST00000498515 228 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AC108078.1-201ENST00000508073 725 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AC104619.4-201ENST00000510773 249 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RAC1P2-201ENST00000511164 579 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 RNU6-390P-201ENST00000516259 103 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RNU6-64P-201ENST00000517119 105 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC4.43□□□□□ -1.7
NUP88Q99567 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.43□□□□□ -1.7
NUP88Q99567 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.43□□□□□ -1.7
NUP88Q99567 AL139286.1-201ENST00000604465 483 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL592295.2-201ENST00000612578 206 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RMST_9.1-201ENST00000619945 193 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AL353748.2-201ENST00000622148 471 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 C2orf27A-204ENST00000623058 969 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 AC119674.1-207ENST00000641355 633 ntBASIC4.43□□□□□ -1.7
NUP88Q99567 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
NUP88Q99567 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC4.43□□□□□ -1.7
NUP88Q99567 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
NUP88Q99567 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
NUP88Q99567 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
NUP88Q99567 RNU6-600P-201ENST00000362524 99 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 SNORA70.4-201ENST00000365509 134 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 RNU6-456P-201ENST00000384493 107 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 RNA5SP239-201ENST00000410218 129 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 MTND3P17-201ENST00000416968 344 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 DPPA2P1-201ENST00000428060 556 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC024082.2-201ENST00000434771 238 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.42□□□□□ -1.7
NUP88Q99567 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.42□□□□□ -1.7
NUP88Q99567 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC4.42□□□□□ -1.7
NUP88Q99567 AL162389.1-201ENST00000449233 177 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.42□□□□□ -1.7
NUP88Q99567 AL121877.1-201ENST00000453704 622 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 snoU13.4-201ENST00000458916 104 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 snoU13.24-201ENST00000458998 104 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 snoU13.22-201ENST00000459428 104 ntBASIC4.42□□□□□ -1.7
NUP88Q99567 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.42□□□□□ -1.7
NUP88Q99567 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms