Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 MIR3146-201ENST00000580367 79 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 MIR4742-201ENST00000581069 85 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC006504.6-201ENST00000590142 199 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AL161756.2-201ENST00000604597 246 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AL121655.1-201ENST00000605811 308 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC130324.3-201ENST00000614165 542 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC008121.3-201ENST00000618726 433 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AL357559.1-201ENST00000622228 274 ntBASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USHBP1Q8N6Y0 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC097714.1-201ENST00000511272 1647 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 RPL36P19-201ENST00000430744 301 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 PTMAP3-201ENST00000447474 330 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 RNU4-49P-201ENST00000516080 140 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC087369.1-201ENST00000520775 996 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC100770.1-201ENST00000532310 322 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC093249.1-201ENST00000567049 203 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC008638.3-201ENST00000603341 463 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC090971.5-201ENST00000621102 293 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC067931.1-201ENST00000624190 671 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 CYP3A51P-201ENST00000633513 256 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 MTND5P42-201ENST00000637720 498 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AC139713.2-215ENST00000641428 5037 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 MAPK10-320ENST00000641462 6696 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 AL118496.1-201ENST00000440201 1812 ntBASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
USHBP1Q8N6Y0 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.132-201ENST00000363421 102 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 Y_RNA.184-201ENST00000363884 108 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 U1.1-201ENST00000384101 164 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 MIR559-201ENST00000385188 96 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 SNORA75.4-201ENST00000391278 119 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RPL21P17-201ENST00000397467 475 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AL024474.1-201ENST00000404655 591 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 DEFB109F-201ENST00000491870 277 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RN7SKP256-201ENST00000517201 314 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC008694.2-201ENST00000517591 306 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AP003497.1-201ENST00000528472 562 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RPL21P7-201ENST00000557463 483 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 MIR3922-201ENST00000585192 84 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 RPL23AP92-201ENST00000603609 255 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC009318.4-201ENST00000620496 486 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 Z95327.2-201ENST00000414579 1873 ntBASIC5.22□□□□□ -1.57
USHBP1Q8N6Y0 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 MIR548P-201ENST00000408336 84 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AL645937.1-202ENST00000421799 937 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AC093156.1-201ENST00000440382 670 ntBASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.21□□□□□ -1.58
USHBP1Q8N6Y0 SNORD19B-201ENST00000459623 84 ntBASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms