Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 API5P2-201ENST00000397055 1498 ntBASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
HDDC3Q8N4P3 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 SDAD1P2-201ENST00000441308 2028 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 Y_RNA.311-201ENST00000365068 96 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 RPL23AP29-201ENST00000397284 453 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 SPA17P1-201ENST00000416656 452 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 HMGN1P18-201ENST00000457642 277 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC104563.1-201ENST00000476147 376 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 PRELID3BP6-201ENST00000503839 571 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 TTC39CP1-201ENST00000512513 755 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 RNA5SP356-201ENST00000515972 94 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 SCARNA15.2-201ENST00000516409 127 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 RNU6-928P-201ENST00000516876 104 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 CYCSP2-201ENST00000558168 301 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC034268.2-201ENST00000571784 482 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AL133507.1-201ENST00000605269 557 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AL121652.1-201ENST00000608851 448 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC131235.4-201ENST00000609288 620 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC109809.1-201ENST00000619665 545 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC079597.1-201ENST00000624306 508 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC073476.4-201ENST00000628409 72 ntBASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HDDC3Q8N4P3 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RNU6-359P-201ENST00000365466 108 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RNU6-1207P-201ENST00000384343 107 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 SNORD67-201ENST00000390833 111 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RN7SKP220-201ENST00000410611 288 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RNA5SP107-201ENST00000411358 122 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 MTATP6P20-201ENST00000414147 562 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 EEF1A1P41-201ENST00000414667 207 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RPS3AP37-201ENST00000419176 745 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AL645937.1-202ENST00000421799 937 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 BX119904.4-201ENST00000424402 301 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 MTND5P14-201ENST00000441481 1267 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 SNORD121B-201ENST00000458838 81 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RPS27P29-201ENST00000463110 252 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RPL30P9-201ENST00000465586 330 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 SNORA31.21-201ENST00000517180 77 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 COX6CP8-201ENST00000522620 226 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AHI1-217ENST00000534469 680 ntTSL 3 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 GTF3AP2-201ENST00000557014 266 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 HMGB1P6-201ENST00000569046 646 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RPL23AP84-201ENST00000571193 464 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 MIR3162-201ENST00000581818 82 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 MIR4435-1-201ENST00000582552 80 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC008507.1-201ENST00000587506 734 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 ELOCP29-201ENST00000588193 334 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 RPL23AP78-201ENST00000599928 470 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 DUXAP3-201ENST00000603616 594 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC006270.3-201ENST00000605967 1036 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 GMFB-210ENST00000628554 639 ntTSL 4 BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC116618.1-201ENST00000634617 774 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 MTND4P9-201ENST00000507819 1346 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC099654.7-201ENST00000635788 2127 ntBASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HDDC3Q8N4P3 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 GABRG2-229ENST00000641017 3628 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 OR5J1P-201ENST00000313544 939 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 MIR22-201ENST00000362190 85 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 RNU6-805P-201ENST00000365643 106 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 RNU6-637P-201ENST00000384050 107 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 SNORA36C-201ENST00000384289 132 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 Y_RNA.548-201ENST00000384656 105 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL445529.1-201ENST00000398713 389 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL356421.1-201ENST00000403255 413 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AL136310.1-201ENST00000404926 654 ntBASIC3.1□□□□□ -1.91
HDDC3Q8N4P3 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms