Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PDSS1P1-201ENST00000422953 1114 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 RPL36AP6-201ENST00000435770 321 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC079804.1-201ENST00000461922 436 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RPL23AP65-201ENST00000475608 468 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC093278.1-201ENST00000494700 600 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC117522.3-201ENST00000507974 584 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 MIR4286-201ENST00000580651 93 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
USP48Q86UV5 MIR4795-201ENST00000584182 89 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AC005498.1-201ENST00000592125 465 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.34□□□□□ -1.55
USP48Q86UV5 uc_338.13-201ENST00000618243 179 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 AC055839.1-201ENST00000634467 498 ntBASIC5.34□□□□□ -1.55
USP48Q86UV5 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.34□□□□□ -1.55
USP48Q86UV5 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.34□□□□□ -1.55
USP48Q86UV5 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.34□□□□□ -1.56
USP48Q86UV5 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
USP48Q86UV5 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.33□□□□□ -1.56
USP48Q86UV5 AC116667.1-201ENST00000604855 2072 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP48Q86UV5 FRG1CP-201ENST00000358464 769 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP48Q86UV5 RNU6-845P-201ENST00000362578 103 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 Y_RNA.142-201ENST00000363491 102 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP48Q86UV5 MIR135A2-201ENST00000384854 100 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AC007390.1-201ENST00000415722 356 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AC009161.1-201ENST00000417306 376 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AL121871.1-201ENST00000443413 436 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AL162151.2-201ENST00000448875 158 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AL162389.1-201ENST00000449233 177 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 RPS29P15-201ENST00000458329 171 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 RPL7L1P8-201ENST00000469911 741 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
USP48Q86UV5 AC108022.1-201ENST00000493466 478 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 RNU4-60P-201ENST00000517239 135 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC5.33□□□□□ -1.56
USP48Q86UV5 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC5.33□□□□□ -1.56
USP48Q86UV5 NCAPGP2-201ENST00000557911 754 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.33□□□□□ -1.56
USP48Q86UV5 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.33□□□□□ -1.56
USP48Q86UV5 MIR4775-201ENST00000581168 75 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC5.33□□□□□ -1.56
USP48Q86UV5 AC022432.1-201ENST00000595739 310 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 AL034351.1-201ENST00000605288 668 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 TUG1_2.1-201ENST00000614234 87 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP48Q86UV5 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP48Q86UV5 MIR6715B-201ENST00000637172 77 ntBASIC5.33□□□□□ -1.56
USP48Q86UV5 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP48Q86UV5 MTND5P3-201ENST00000438536 1800 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
USP48Q86UV5 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC5.32□□□□□ -1.56
USP48Q86UV5 ASNSP3-201ENST00000451989 1306 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.32□□□□□ -1.56
USP48Q86UV5 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.32□□□□□ -1.56
USP48Q86UV5 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.32□□□□□ -1.56
USP48Q86UV5 RNU6-179P-201ENST00000363350 107 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 RNA5SP513-201ENST00000364648 118 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP48Q86UV5 CD3D-202ENST00000392884 476 ntTSL 2 BASIC5.32□□□□□ -1.56
USP48Q86UV5 RNU6-193P-201ENST00000410977 107 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP48Q86UV5 SRIP2-201ENST00000428470 166 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.32□□□□□ -1.56
USP48Q86UV5 MTND1P18-201ENST00000448191 573 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC008481.1-201ENST00000463278 396 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 FGF7P4-201ENST00000509595 295 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 RNU4-29P-201ENST00000515943 174 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 RN7SKP219-201ENST00000516825 296 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 RNA5SP503-201ENST00000517047 117 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AF186190.1-201ENST00000517470 480 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC090151.1-201ENST00000520784 730 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC103843.2-201ENST00000530523 682 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC100770.1-201ENST00000532310 322 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 HPRT1P3-201ENST00000539521 576 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP48Q86UV5 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP48Q86UV5 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 TVP23BP1-201ENST00000557500 617 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.32□□□□□ -1.56
USP48Q86UV5 AC091178.1-203ENST00000584586 279 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 HMGB2P1-201ENST00000591146 634 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC010680.3-201ENST00000604215 520 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC013553.2-201ENST00000604244 589 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 AC012443.1-201ENST00000605605 231 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 SNHG22-203ENST00000617833 660 ntBASIC5.32□□□□□ -1.56
USP48Q86UV5 MIR7154-201ENST00000620673 73 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms