Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.54□□□□□ -1.84
USP43Q70EL4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 DCAF13P1-201ENST00000495256 1330 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC3.53□□□□□ -1.84
USP43Q70EL4 AL158163.1-201ENST00000603915 1649 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
USP43Q70EL4 OR52E6-202ENST00000379946 954 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 SNORA51.12-201ENST00000384448 134 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 Y_RNA.598-201ENST00000410480 95 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.53□□□□□ -1.84
USP43Q70EL4 AC108032.1-201ENST00000416706 207 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 PDCL2P1-201ENST00000419302 352 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 RPL31P12-201ENST00000422587 358 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 TIMM9P3-201ENST00000428659 274 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 TAAR7P-201ENST00000436141 242 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 RPL23AP52-201ENST00000439311 478 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 SDCBPP1-201ENST00000440192 890 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.53□□□□□ -1.84
USP43Q70EL4 USP9YP12-201ENST00000450481 570 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.53□□□□□ -1.84
USP43Q70EL4 OFD1P4Y-201ENST00000455273 1179 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 snoU109.1-201ENST00000459339 135 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.53□□□□□ -1.84
USP43Q70EL4 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.53□□□□□ -1.84
USP43Q70EL4 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC3.53□□□□□ -1.84
USP43Q70EL4 Vault.1-201ENST00000516474 102 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 Y_RNA.704-201ENST00000516851 102 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.53□□□□□ -1.84
USP43Q70EL4 AC093331.1-201ENST00000521474 169 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 TRAV8-5-201ENST00000537369 341 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC093519.1-201ENST00000566109 298 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 MIR4425-201ENST00000580572 84 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AP001180.3-201ENST00000582221 145 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC3.53□□□□□ -1.84
USP43Q70EL4 AC112187.2-201ENST00000604345 283 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AP001506.1-201ENST00000615444 211 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC108479.2-201ENST00000617314 601 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 AC093591.3-201ENST00000634516 308 ntBASIC3.53□□□□□ -1.84
USP43Q70EL4 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
USP43Q70EL4 AC119744.1-201ENST00000454746 1715 ntBASIC3.53□□□□□ -1.85
USP43Q70EL4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP43Q70EL4 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
USP43Q70EL4 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USP43Q70EL4 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.52□□□□□ -1.85
USP43Q70EL4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AL512646.1-201ENST00000269395 1077 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RNU1-14P-201ENST00000362759 152 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 Y_RNA.58-201ENST00000362807 102 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 Y_RNA.144-201ENST00000363521 113 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 Y_RNA.154-201ENST00000363624 102 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RNY3P1-201ENST00000365085 102 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RNY3-201ENST00000365484 102 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 Y_RNA.490-201ENST00000384413 102 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RNU6-1122P-201ENST00000384449 107 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RNU6-1151P-201ENST00000384684 107 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 Y_RNA.573-201ENST00000384763 105 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 MIR606-201ENST00000384851 96 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 SNORA75.4-201ENST00000391278 119 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.52□□□□□ -1.85
USP43Q70EL4 RNA5SP36-201ENST00000410197 133 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RN7SKP235-201ENST00000410662 305 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AL356095.1-201ENST00000417217 199 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AL353729.1-201ENST00000425044 720 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 MTCO2P12-201ENST00000427426 682 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 RPL7P2-201ENST00000427639 268 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 BX890604.2-201ENST00000427883 474 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AL358472.1-201ENST00000431295 329 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 GPM6BP2-201ENST00000432046 144 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC3.52□□□□□ -1.85
USP43Q70EL4 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC006011.1-201ENST00000442758 349 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 GPM6BP1-201ENST00000446387 144 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.52□□□□□ -1.85
USP43Q70EL4 RN7SL691P-201ENST00000494487 301 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.52□□□□□ -1.85
USP43Q70EL4 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USP43Q70EL4 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
USP43Q70EL4 MTND4LP22-201ENST00000508209 276 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 RN7SKP60-201ENST00000516985 239 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AC023632.4-201ENST00000517783 191 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 MTND1P35-201ENST00000526739 508 ntBASIC3.52□□□□□ -1.85
USP43Q70EL4 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.52□□□□□ -1.85
USP43Q70EL4 AC022878.1-201ENST00000530684 149 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms